C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168423 Smad2-001 ENSMUSG00000024563 10090 + 18:76241580-76305731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168423
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168423 3.188±0.71 11.107±5.03 6.747±4.10 4.024±1.81 1.055±0.07 1.492±0.37 1.466±0.38 2.888±1.38 2.279±0.23 1.703±0.56 4.317±3.11 10.246±4.69 1.000±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EL CIL_0008EL_0002 VISTA 18:75860386-76461964
CIL_0008FI CIL_0008FI_0002 VISTA 18:75921908-76522726

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0001657 IEP ureteric bud development
GO:0001701 IGI in utero embryonic development
GO:0001706 IMP endoderm formation
GO:0001707 IMP mesoderm formation
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003690 IDA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005160 IEA transforming growth factor beta receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IDA protein phosphorylation
GO:0007179 IDA transforming growth factor beta receptor signaling pathway
GO:0007182 ISO common-partner SMAD protein phosphorylation
GO:0007183 IEA SMAD protein complex assembly
GO:0007352 IEA zygotic specification of dorsal/ventral axis
GO:0007369 IGI gastrulation
GO:0007389 IGI pattern specification process
GO:0007492 IGI endoderm development
GO:0007507 IGI heart development
GO:0008134 IPI transcription factor binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0009749 IGI response to glucose
GO:0009791 IGI post-embryonic development
GO:0009880 IGI embryonic pattern specification
GO:0009952 IMP anterior/posterior pattern specification
GO:0010628 IMP positive regulation of gene expression
GO:0010629 IMP negative regulation of gene expression
GO:0010718 IMP positive regulation of epithelial to mesenchymal transition
GO:0017015 IEA regulation of transforming growth factor beta receptor signaling pathway
GO:0019902 IEA phosphatase binding
GO:0023019 IEA signal transduction involved in regulation of gene expression
GO:0030073 IGI insulin secretion
GO:0030324 IGI lung development
GO:0030513 IEA positive regulation of BMP signaling pathway
GO:0030618 IEA transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity
GO:0031016 IGI pancreas development
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032444 IEA activin responsive factor complex
GO:0032924 IEA activin receptor signaling pathway
GO:0033613 IEA activating transcription factor binding
GO:0034713 IEA type I transforming growth factor beta receptor binding
GO:0035265 IGI organ growth
GO:0035556 IDA intracellular signal transduction
GO:0038092 IEA nodal signaling pathway
GO:0043234 IEA protein complex
GO:0045165 IMP cell fate commitment
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IDA:IMP positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0048340 IMP paraxial mesoderm morphogenesis
GO:0048589 IGI developmental growth
GO:0048617 IGI embryonic foregut morphogenesis
GO:0048701 IGI embryonic cranial skeleton morphogenesis
GO:0051098 IDA regulation of binding
GO:0060021 IMP palate development
GO:0060039 IGI pericardium development
GO:0060395 IGI SMAD protein signal transduction
GO:0070410 IEA co-SMAD binding
GO:0070411 IEA I-SMAD binding
GO:0070412 IEA R-SMAD binding
GO:0070723 IEA response to cholesterol
GO:0071141 IEA SMAD protein complex
GO:0071144 IEA SMAD2-SMAD3 protein complex
GO:1900224 IEA positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000044756 smad2-201 protein_coding Danio_rerio 0 1072
ENSDART00000147653 smad2-002 protein_coding Danio_rerio 0 1062
ENSDART00000121892 smad2-001 protein_coding Danio_rerio 0 1062
ENSDART00000128579 smad2-202 protein_coding Danio_rerio 0 1053
ENSDART00000143608 smad2-004 protein_coding Danio_rerio 0 342
ENST00000262160 SMAD2-001 protein_coding Homo_sapiens 0 2614
ENST00000356825 SMAD2-201 protein_coding Homo_sapiens 0 2093
ENST00000402690 SMAD2-002 protein_coding Homo_sapiens 0 2822
ENST00000585978 SMAD2-009 protein_coding Homo_sapiens 0 525
ENST00000586040 SMAD2-004 protein_coding Homo_sapiens 0 2052
ENST00000586487 SMAD2-010 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000586514 SMAD2-005 protein_coding Homo_sapiens 0 935
ENST00000587269 SMAD2-008 protein_coding Homo_sapiens 0 935
ENST00000587353 SMAD2-011 processed_transcript Homo_sapiens 0 566
ENST00000587421 SMAD2-007 protein_coding Homo_sapiens 0 616
ENST00000589877 SMAD2-006 protein_coding Homo_sapiens 0 529
ENST00000591214 SMAD2-003 protein_coding Homo_sapiens 0 1308

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