C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586514 SMAD2-005 ENSG00000175387 9606 - 18:47868327-47930837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungENST00000586514
Transcript ID Brain Breast Heart Kidney Liver Lung
ENST00000586514 7.424±0.00 10.539±0.00 5.284±0.00 5.058±0.00 14.115±0.00 15.294±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OV CIL_0008OV_0001 VISTA 18:47242733-47843421
CIL_0008IS CIL_0008IS_0001 VISTA 18:47260919-47861703
CIL_0008FI CIL_0008FI_0001 VISTA 18:47646469-48247329
CIL_0008EL CIL_0008EL_0001 VISTA 18:47706836-48309090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007179 IEA transforming growth factor beta receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171256 Smad2-005 protein_coding Mus_musculus 0 974
ENSMUST00000025453 Smad2-002 protein_coding Mus_musculus 0 935
ENSMUST00000168423 Smad2-001 protein_coding Mus_musculus 0 935
ENSDART00000044756 smad2-201 protein_coding Danio_rerio 0 455
ENSDART00000147653 smad2-002 protein_coding Danio_rerio 0 455
ENSDART00000121892 smad2-001 protein_coding Danio_rerio 0 455
ENSDART00000128579 smad2-202 protein_coding Danio_rerio 0 449
ENSMUST00000172198 Smad2-006 protein_coding Mus_musculus 0 416
ENSMUST00000113930 Smad2-004 protein_coding Mus_musculus 0 414
ENSMUST00000091831 Smad2-003 protein_coding Mus_musculus 0 414
ENSDART00000143608 smad2-004 protein_coding Danio_rerio 0 357
ENSMUST00000165084 Smad2-007 protein_coding Mus_musculus 0 348

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