C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173010 Atf2-017 ENSMUSG00000027104 10090 - 2:73818822-73863238 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungTestisENSMUST00000173010
Transcript ID Adrenal Breast Colon Kidney Liver Lung Testis
ENSMUST00000173010 1.819±0.42 2.721±0.91 2.103±0.46 2.572±0.00 1.112±0.00 2.582±0.00 11.938±2.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HB CIL_0001HB_0002 CGP 2:73610660-73892639
CIL_0001H6 CIL_0001H6_0002 CGP 2:73816509-73911326

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003151 IMP outflow tract morphogenesis
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 ISO sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0016020 IDA membrane
GO:0032915 IMP positive regulation of transforming growth factor beta2 production
GO:0043565 IEA sequence-specific DNA binding
GO:0045444 IGI fat cell differentiation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0060612 IGI adipose tissue development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264110 ATF2-001 protein_coding Homo_sapiens 0 1794
ENST00000345739 ATF2-013 protein_coding Homo_sapiens 0 1520
ENST00000392544 ATF2-002 protein_coding Homo_sapiens 0 1794
ENST00000409437 ATF2-011 protein_coding Homo_sapiens 0 649
ENST00000409499 ATF2-014 protein_coding Homo_sapiens 0 649
ENST00000409635 ATF2-012 protein_coding Homo_sapiens 0 1520
ENST00000409833 ATF2-009 protein_coding Homo_sapiens 0 955
ENST00000413123 ATF2-017 processed_transcript Homo_sapiens 5e-19 99
ENST00000415955 ATF2-007 nonsense_mediated_decay Homo_sapiens 0 2230
ENST00000417080 ATF2-003 nonsense_mediated_decay Homo_sapiens 0 2032
ENST00000421438 ATF2-005 nonsense_mediated_decay Homo_sapiens 0 955
ENST00000426833 ATF2-201 protein_coding Homo_sapiens 0 1794
ENST00000428760 ATF2-008 nonsense_mediated_decay Homo_sapiens 0 2501
ENST00000429579 ATF2-006 nonsense_mediated_decay Homo_sapiens 0 2032
ENST00000435004 ATF2-021 protein_coding Homo_sapiens 0 739
ENST00000435231 ATF2-020 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000437522 ATF2-015 protein_coding Homo_sapiens 0 878
ENST00000445349 ATF2-016 processed_transcript Homo_sapiens 4e-19 99
ENST00000456655 ATF2-004 nonsense_mediated_decay Homo_sapiens 0 2230
ENST00000478905 ATF2-018 retained_intron Homo_sapiens 0 281
ENST00000538946 ATF2-202 protein_coding Homo_sapiens 0 977

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