C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 4617
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178993 Gm4617-201 ENSMUSG00000096544 10090 + 3:124385510-124385998 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000178993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178993 38.884±18.21 12.391±9.86 0.174±0.00 0.621±0.35 74.157±36.35 34.812±3.63 4.065±0.64 15.941±8.95 1.775±1.26 46.549±10.83 0.108±0.04 77.393±45.58 0.819±0.53 3.692±2.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341369 PTMA-002 protein_coding Homo_sapiens 0 499
ENST00000397729 PTMAP8-001 processed_pseudogene Homo_sapiens 0 363
ENST00000409115 PTMA-001 protein_coding Homo_sapiens 0 492
ENST00000409321 PTMA-012 protein_coding Homo_sapiens 0 438
ENST00000409683 PTMA-007 protein_coding Homo_sapiens 0 466
ENST00000410064 PTMA-004 protein_coding Homo_sapiens 0 403
ENST00000411648 PTMAP1-001 processed_pseudogene Homo_sapiens 0 219
ENST00000412128 PTMA-008 protein_coding Homo_sapiens 0 394
ENST00000442851 PTMAP1-001 processed_pseudogene Homo_sapiens 0 224
ENST00000444251 PTMAP1-001 processed_pseudogene Homo_sapiens 0 219
ENST00000447774 PTMAP1-001 processed_pseudogene Homo_sapiens 0 219
ENST00000448874 PTMA-011 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000455552 PTMAP1-001 processed_pseudogene Homo_sapiens 0 219
ENST00000456700 PTMAP1-001 processed_pseudogene Homo_sapiens 0 219
ENST00000457022 PTMAP1-001 processed_pseudogene Homo_sapiens 0 219
ENST00000466801 PTMA-013 processed_transcript Homo_sapiens 0 398
ENST00000467816 PTMA-010 retained_intron Homo_sapiens 0 231
ENST00000468027 PTMA-006 retained_intron Homo_sapiens 0 422
ENST00000481928 PTMA-003 retained_intron Homo_sapiens 0 318
ENST00000607242 PTMAP5-002 processed_transcript Homo_sapiens 0 475
ENST00000612829 PTMA-201 protein_coding Homo_sapiens 0 396

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