C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409321 PTMA-012 ENSG00000187514 9606 + 2:231707684-231713108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000409321
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000409321 327.208±0.00 685.156±0.00 193.071±0.00 233.502±0.00 476.133±0.00 26.189±0.00 159.180±0.00 71.081±0.00 445.599±0.00 25.577±0.00 515.543±0.00 220.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FJ CIL_0007FJ_0001 CGP 2:231592901-231713541
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045897 Ptma-001 protein_coding Mus_musculus 0 667
ENSMUST00000052615 Gm9800-201 pseudogene Mus_musculus 0 662
ENSMUST00000120860 Gm12504-002 processed_transcript Mus_musculus 0 446
ENSMUST00000178993 Gm4617-201 processed_pseudogene Mus_musculus 0 438
ENSMUST00000175818 Gm19815-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000122299 Gm15466-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000186255 Ptma-005 protein_coding Mus_musculus 0 392
ENSMUST00000188533 Ptma-006 protein_coding Mus_musculus 0 390
ENSMUST00000179519 Gm21963-201 processed_pseudogene Mus_musculus 0 370
ENSMUST00000117321 Gm9009-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000145087 Gm6706-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000177870 Gm6625-201 protein_coding Mus_musculus 0 315
ENSMUST00000186932 Ptma-004 processed_transcript Mus_musculus 0 257
ENSMUST00000148026 Gm12504-001 transcribed_processed_pseudogene Mus_musculus 0 230
ENSMUST00000188699 Ptma-003 protein_coding Mus_musculus 0 200

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