C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467816 PTMA-010 ENSG00000187514 9606 + 2:231711131-231711978 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FJ CIL_0007FJ_0001 CGP 2:231592901-231713541
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188533 Ptma-006 protein_coding Mus_musculus 0 233
ENSMUST00000045897 Ptma-001 protein_coding Mus_musculus 0 233
ENSMUST00000178993 Gm4617-201 processed_pseudogene Mus_musculus 0 231
ENSMUST00000186932 Ptma-004 processed_transcript Mus_musculus 0 231
ENSMUST00000052615 Gm9800-201 pseudogene Mus_musculus 0 228
ENSMUST00000122299 Gm15466-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000179519 Gm21963-201 processed_pseudogene Mus_musculus 0 206
ENSMUST00000177870 Gm6625-201 protein_coding Mus_musculus 0 206
ENSMUST00000188699 Ptma-003 protein_coding Mus_musculus 0 200
ENSMUST00000117321 Gm9009-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000175818 Gm19815-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000148026 Gm12504-001 transcribed_processed_pseudogene Mus_musculus 2.94273e-44 182
ENSMUST00000120860 Gm12504-002 processed_transcript Mus_musculus 2.94273e-44 182
ENSMUST00000145087 Gm6706-001 processed_pseudogene Mus_musculus 1.00053e-42 176

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