C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin, alpha pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455552 PTMAP1-001 ENSG00000228415 9606 + 6:30633632-30633898 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000455552
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000455552 0.062±0.00 0.435±0.00 0.582±0.00 1.227±0.85 0.203±0.00 0.137±0.00 1.222±0.00 0.502±0.25 0.038±0.00 0.649±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188533 Ptma-006 protein_coding Mus_musculus 0 228
ENSMUST00000045897 Ptma-001 protein_coding Mus_musculus 0 228
ENSMUST00000052615 Gm9800-201 pseudogene Mus_musculus 0 222
ENSMUST00000178993 Gm4617-201 processed_pseudogene Mus_musculus 0 219
ENSMUST00000179519 Gm21963-201 processed_pseudogene Mus_musculus 0 198
ENSMUST00000117321 Gm9009-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000175818 Gm19815-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000186932 Ptma-004 processed_transcript Mus_musculus 5.60519e-45 183
ENSMUST00000148026 Gm12504-001 transcribed_processed_pseudogene Mus_musculus 3.00018e-42 174
ENSMUST00000120860 Gm12504-002 processed_transcript Mus_musculus 3.00018e-42 174
ENSMUST00000177870 Gm6625-201 protein_coding Mus_musculus 3.00018e-42 174
ENSMUST00000145087 Gm6706-001 processed_pseudogene Mus_musculus 2e-40 169
ENSMUST00000188699 Ptma-003 protein_coding Mus_musculus 2e-35 152

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