C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409115 PTMA-001 ENSG00000187514 9606 + 2:231708509-231713541 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409115
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409115 122.209±0.00 46.702±0.00 67.536±0.00 78.213±33.72 83.663±11.37 13.461±3.74 57.024±0.00 121.342±0.00 92.846±0.00 11.633±2.63 290.321±203.68 473.141±139.84 59.044±13.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FJ CIL_0007FJ_0001 CGP 2:231592901-231713541
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 TAS transcription, DNA-templated
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045897 Ptma-001 protein_coding Mus_musculus 0 1443
ENSMUST00000052615 Gm9800-201 pseudogene Mus_musculus 0 1027
ENSMUST00000120860 Gm12504-002 processed_transcript Mus_musculus 0 898
ENSMUST00000186255 Ptma-005 protein_coding Mus_musculus 0 547
ENSMUST00000178993 Gm4617-201 processed_pseudogene Mus_musculus 0 492
ENSMUST00000188533 Ptma-006 protein_coding Mus_musculus 0 466
ENSMUST00000175818 Gm19815-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000122299 Gm15466-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000179519 Gm21963-201 processed_pseudogene Mus_musculus 0 375
ENSMUST00000177870 Gm6625-201 protein_coding Mus_musculus 0 375
ENSMUST00000117321 Gm9009-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000145087 Gm6706-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000186932 Ptma-004 processed_transcript Mus_musculus 0 257
ENSMUST00000148026 Gm12504-001 transcribed_processed_pseudogene Mus_musculus 0 241
ENSMUST00000188699 Ptma-003 protein_coding Mus_musculus 0 200
ENSMUST00000123622 Tmem126b-002 retained_intron Mus_musculus 6e-21 106

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