C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448874 PTMA-011 ENSG00000187514 9606 + 2:231707630-231713465 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000448874
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000448874 157.790±0.00 107.436±0.00 77.497±0.00 187.846±0.00 36.026±0.00 215.827±0.00 68.344±0.00 292.331±0.00 23.597±0.00 54.392±0.00 135.871±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FJ CIL_0007FJ_0001 CGP 2:231592901-231713541
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045897 Ptma-001 protein_coding Mus_musculus 0 1147
ENSMUST00000052615 Gm9800-201 pseudogene Mus_musculus 0 861
ENSMUST00000120860 Gm12504-002 processed_transcript Mus_musculus 0 843
ENSMUST00000186255 Ptma-005 protein_coding Mus_musculus 0 547
ENSMUST00000178993 Gm4617-201 processed_pseudogene Mus_musculus 0 396
ENSMUST00000175818 Gm19815-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000122299 Gm15466-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000188533 Ptma-006 protein_coding Mus_musculus 0 348
ENSMUST00000179519 Gm21963-201 processed_pseudogene Mus_musculus 0 340
ENSMUST00000145087 Gm6706-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000117321 Gm9009-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000177870 Gm6625-201 protein_coding Mus_musculus 0 278
ENSMUST00000186932 Ptma-004 processed_transcript Mus_musculus 0 255
ENSMUST00000188699 Ptma-003 protein_coding Mus_musculus 0 198
ENSMUST00000148026 Gm12504-001 transcribed_processed_pseudogene Mus_musculus 0 193
ENSMUST00000123622 Tmem126b-002 retained_intron Mus_musculus 5e-21 106

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