C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 17800
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182466 Gm17800-001 ENSMUSG00000097950 10090 - 19:24692400-24693370 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENSMUST00000182466
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000182466 0.242±0.08 0.262±0.08 0.021±0.01 0.084±0.04 0.120±0.05 0.046±0.02 0.031±0.00 0.178±0.08 0.084±0.04 0.042±0.00 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086N CIL_00086N_0002 VISTA 19:24151986-24754280
CIL_0009AF CIL_0009AF_0002 VISTA 19:24645396-25246544

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 202
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 577
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 370
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 571
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 577
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 577
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 361
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 241
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 418
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 267
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 327
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 309
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 302
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 224
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 255
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 370
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 370
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 538
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 412
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 239
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 261
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 497

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