C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5272
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182730 Gm5272-001 ENSMUSG00000098226 10090 - 3:6450607-6451588 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeTestisENSMUST00000182730
Transcript ID Adipose Testis
ENSMUST00000182730 0.035±0.00 0.052±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0004 UCNEbase 3:3760514-6887688
CIL_0008TH CIL_0008TH_0002 VISTA 3:5881861-6484107

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 213
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 760
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 688
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 745
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 760
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 760
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 545
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 619
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 507
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 621
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 318
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 425
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 350
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 359
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 2e-25 117
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 446
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 688
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 688
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 344
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 481
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 599
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 309
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 309
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 691

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