C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: staufen (RNA binding protein) homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184390 Stau1-004 ENSMUSG00000039536 10090 - 2:166949292-166964716 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENSMUST00000184390
Transcript ID Brain Ovary Testis
ENSMUST00000184390 11.268±0.00 18.291±0.00 6.555±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XR CIL_0001XR_0002 CGP 2:166906040-166996299
CIL_0001T2 CIL_0001T2_0002 CGP 2:166947549-167034947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0008298 IDA intracellular mRNA localization
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340954 STAU1-004 protein_coding Homo_sapiens 0 1099
ENST00000347458 STAU1-003 protein_coding Homo_sapiens 0 1099
ENST00000360426 STAU1-002 protein_coding Homo_sapiens 0 1099
ENST00000371792 STAU1-007 protein_coding Homo_sapiens 0 1077
ENST00000371802 STAU1-006 protein_coding Homo_sapiens 0 1199
ENST00000371828 STAU1-201 protein_coding Homo_sapiens 0 1199
ENST00000371856 STAU1-001 protein_coding Homo_sapiens 0 1099
ENST00000614381 STAU1-202 protein_coding Homo_sapiens 0 1046

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