C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5066
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188479 RP23-118M23.7-001 ENSMUSG00000100337 10090 - 9:88280369-88281190 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonHeartKidneyLiverLungPlacentaTestisENSMUST00000188479
Transcript ID Adipose Bladder Colon Heart Kidney Liver Lung Placenta Testis
ENSMUST00000188479 0.105±0.02 0.023±0.00 0.243±0.09 0.132±0.02 0.084±0.00 0.044±0.00 0.096±0.00 0.050±0.00 0.164±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_00066W CIL_00066W_0002 CGP 9:87702800-88372092
CIL_0008Z8 CIL_0008Z8_0002 VISTA 9:87730648-88334977
CIL_0007RZ CIL_0007RZ_0002 VISTA 9:87748577-88350948
CIL_0007TJ CIL_0007TJ_0002 VISTA 9:87770457-88374527
CIL_0008Z9 CIL_0008Z9_0002 VISTA 9:87836921-88439766
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341119 SLC25A40-001 protein_coding Homo_sapiens 0 763
ENST00000429674 SLC25A40-004 nonsense_mediated_decay Homo_sapiens 0 584

Loading