C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447360 LRRC28-003 ENSG00000168904 9606 + 15:99251505-99386296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000447360
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000447360 2.458±0.00 1.521±0.00 2.212±0.24 1.913±0.00 1.766±0.00 4.017±0.00 5.230±0.00 2.337±0.44 4.418±0.00 2.134±0.10 4.795±1.08 5.976±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079Q CIL_00079Q_0002 CGP 15:99251362-99716466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053950 Lrrc28-001 protein_coding Mus_musculus 0 1070
ENSMUST00000032775 Lrrc28-002 protein_coding Mus_musculus 0 575
ENSMUST00000190276 Lrrc28-007 protein_coding Mus_musculus 0 575
ENSMUST00000191035 Lrrc28-005 nonsense_mediated_decay Mus_musculus 0 573
ENSMUST00000190115 Lrrc28-006 processed_transcript Mus_musculus 0 499
ENSMUST00000187953 Lrrc28-003 nonsense_mediated_decay Mus_musculus 0 350
ENSMUST00000189836 Lrrc28-011 protein_coding Mus_musculus 0 348
ENSMUST00000191062 Lrrc28-013 processed_transcript Mus_musculus 0 276
ENSMUST00000188971 Lrrc28-010 processed_transcript Mus_musculus 0 274

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