C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561276 LRRC28-006 ENSG00000168904 9606 + 15:99251520-99386035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000561276
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000561276 4.332±0.00 1.891±0.00 3.866±0.00 5.237±2.38 3.722±0.00 3.071±0.00 5.121±1.94 1.334±0.00 5.380±0.00 2.862±0.00 2.524±0.63 10.209±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079Q CIL_00079Q_0002 CGP 15:99251362-99716466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053950 Lrrc28-001 protein_coding Mus_musculus 0 1014
ENSMUST00000190115 Lrrc28-006 processed_transcript Mus_musculus 0 713
ENSMUST00000187953 Lrrc28-003 nonsense_mediated_decay Mus_musculus 0 564
ENSMUST00000191035 Lrrc28-005 nonsense_mediated_decay Mus_musculus 0 560
ENSMUST00000032775 Lrrc28-002 protein_coding Mus_musculus 0 305
ENSMUST00000190276 Lrrc28-007 protein_coding Mus_musculus 0 305
ENSMUST00000191062 Lrrc28-013 processed_transcript Mus_musculus 0 276
ENSMUST00000188971 Lrrc28-010 processed_transcript Mus_musculus 0 274
ENSMUST00000189836 Lrrc28-011 protein_coding Mus_musculus 0.000000000001 79

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