C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558172 LRRC28-010 ENSG00000168904 9606 + 15:99251515-99361509 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryPlacentaTestisENST00000558172
Transcript ID Bladder Ovary Placenta Testis
ENST00000558172 5.294±0.00 6.088±0.00 2.587±0.00 7.158±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079Q CIL_00079Q_0002 CGP 15:99251362-99716466

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191035 Lrrc28-005 nonsense_mediated_decay Mus_musculus 0 346
ENSMUST00000190115 Lrrc28-006 processed_transcript Mus_musculus 0 346
ENSMUST00000187953 Lrrc28-003 nonsense_mediated_decay Mus_musculus 0 346
ENSMUST00000053950 Lrrc28-001 protein_coding Mus_musculus 0 346
ENSMUST00000191062 Lrrc28-013 processed_transcript Mus_musculus 0 276
ENSMUST00000189836 Lrrc28-011 protein_coding Mus_musculus 0 272
ENSMUST00000032775 Lrrc28-002 protein_coding Mus_musculus 0 272
ENSMUST00000190276 Lrrc28-007 protein_coding Mus_musculus 0 272
ENSMUST00000188971 Lrrc28-010 processed_transcript Mus_musculus 0 270

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