C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP58 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190265 Nop58-014 ENSMUSG00000026020 10090 + 1:59698416-59707064 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaENSMUST00000190265
Transcript ID Brain Ovary Placenta
ENSMUST00000190265 15.483±0.00 40.760±0.00 62.161±32.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0002 CGP 1:59586558-59719044
CIL_00020S CIL_00020S_0002 CGP 1:59684971-59879014

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264279 NOP58-001 protein_coding Homo_sapiens 0 712
ENST00000433543 NOP58-008 nonsense_mediated_decay Homo_sapiens 0 992
ENST00000478941 NOP58-004 retained_intron Homo_sapiens 0.00000000000004 82
ENST00000492688 NOP58-005 processed_transcript Homo_sapiens 0 370
ENST00000564443 RP11-430C1.2-001 processed_pseudogene Homo_sapiens 4e-28 128

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