C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP58 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000191088 Nop58-003 ENSMUSG00000026020 10090 + 1:59684971-59692666 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000191088
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000191088 8.625±0.00 10.138±1.01 12.886±0.00 11.320±3.38 1.930±0.00 3.877±0.83 5.741±3.43 8.131±2.62 16.360±8.23 11.436±2.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020T CIL_00020T_0002 CGP 1:59586558-59719044
CIL_00020S CIL_00020S_0002 CGP 1:59684971-59879014

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264279 NOP58-001 protein_coding Homo_sapiens 0 307
ENST00000426814 NOP58-006 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000467734 NOP58-007 processed_transcript Homo_sapiens 1e-19 100
ENST00000472050 NOP58-003 processed_transcript Homo_sapiens 0 307
ENST00000478941 NOP58-004 retained_intron Homo_sapiens 0 198
ENST00000488403 NOP58-002 retained_intron Homo_sapiens 0 307
ENST00000492688 NOP58-005 processed_transcript Homo_sapiens 6e-33 145
ENST00000492740 NOP58-009 retained_intron Homo_sapiens 0 213

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