C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18A, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161190 Rpl18a-ps1-001 ENSMUSG00000059033 10090 - 12:55395707-55396229 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000161190
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000161190 0.358±0.13 0.158±0.05 0.268±0.00 0.103±0.03 0.493±0.55 0.345±0.13 0.250±0.02 0.490±0.15 0.117±0.07 0.115±0.05 0.419±0.20 0.027±0.00 0.335±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045I CIL_00045I_0002 CGP 12:55299577-55418454
CIL_0008MF CIL_0008MF_0002 VISTA 12:55314270-55915258
CIL_0008ME CIL_0008ME_0002 VISTA 12:55343542-55944223
CIL_0001RJ CIL_0001RJ_0002 CGP 12:55384222-55492647

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000030215 rpl18a-001 protein_coding Danio_rerio 0 403
ENSDART00000148933 rpl18a-002 nonsense_mediated_decay Danio_rerio 0 274
ENST00000222247 RPL18A-001 protein_coding Homo_sapiens 0 612
ENST00000401937 RP4-803A2.1-001 processed_pseudogene Homo_sapiens 0 416
ENST00000430258 RPL18AP15-001 processed_pseudogene Homo_sapiens 0 438
ENST00000455430 AC004692.5-001 processed_pseudogene Homo_sapiens 0.000007 55
ENST00000456046 AC079250.1-001 processed_pseudogene Homo_sapiens 0 579
ENST00000462885 RPL18AP3-001 processed_pseudogene Homo_sapiens 0 606
ENST00000469219 RP11-85G20.1-001 processed_pseudogene Homo_sapiens 0 457
ENST00000597648 RPL18A-007 protein_coding Homo_sapiens 0 568
ENST00000599870 RPL18A-005 protein_coding Homo_sapiens 0 590
ENST00000599898 RPL18A-008 protein_coding Homo_sapiens 0 462
ENST00000600147 RPL18A-002 protein_coding Homo_sapiens 0.0000000002 71

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