C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2be
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051091 Hist1h2be-001 ENSMUSG00000047246 10090 - 13:23583743-23621124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051091
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051091 1.769±0.39 0.589±0.09 0.851±0.37 0.364±0.00 1.905±0.49 0.437±0.06 0.371±0.07 1.561±1.26 1.639±0.00 0.506±0.11 1.281±0.97 0.410±0.41 0.324±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LM CIL_0000LM_0004 CGP 13:23583742-23622502

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0002227 IEA innate immune response in mucosa
GO:0003677 IEA DNA binding
GO:0005615 IEA extracellular space
GO:0005654 TAS nucleoplasm
GO:0019731 IEA antibacterial humoral response
GO:0046982 IEA protein heterodimerization activity
GO:0050830 IEA defense response to Gram-positive bacterium
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 379
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 379
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 374
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 351
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 344
ENST00000222388 ABCF2-003 protein_coding Homo_sapiens 0 222
ENST00000289316 HIST1H2BD-001 protein_coding Homo_sapiens 0 525
ENST00000314332 HIST1H2BC-003 protein_coding Homo_sapiens 0 556
ENST00000339812 HIST1H2BJ-003 protein_coding Homo_sapiens 0 496
ENST00000356530 HIST1H2BF-001 protein_coding Homo_sapiens 0 512
ENST00000356950 HIST1H2BK-001 protein_coding Homo_sapiens 0 534
ENST00000369155 HIST2H2BE-001 protein_coding Homo_sapiens 0 547
ENST00000369160 HIST2H2BE-201 protein_coding Homo_sapiens 0 540
ENST00000369167 HIST2H2BF-001 protein_coding Homo_sapiens 0 540
ENST00000369177 HIST1H2BPS1-001 processed_pseudogene Homo_sapiens 0 313
ENST00000369385 HIST2H2BD-001 processed_pseudogene Homo_sapiens 0 520
ENST00000377401 HIST1H2BL-001 protein_coding Homo_sapiens 0 582
ENST00000377733 HIST1H2BI-001 protein_coding Homo_sapiens 0 540
ENST00000377777 HIST1H2BD-002 protein_coding Homo_sapiens 0 532
ENST00000396980 HIST1H2BN-201 protein_coding Homo_sapiens 0 582
ENST00000396984 HIST1H2BC-002 protein_coding Homo_sapiens 0 569
ENST00000412169 HIST2H2BA-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 512
ENST00000419683 HIST1H2BPS3-001 processed_pseudogene Homo_sapiens 0 320
ENST00000430394 HIST2H2BA-002 processed_transcript Homo_sapiens 0 508
ENST00000436555 HIST3H2BA-001 unitary_pseudogene Homo_sapiens 0 486
ENST00000449108 HIST2H2BB-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 512
ENST00000449538 HIST1H2BN-002 nonsense_mediated_decay Homo_sapiens 0 573
ENST00000464664 CH507-42P11.1-001 processed_pseudogene Homo_sapiens 0 521
ENST00000465850 RP11-274J15.2-001 processed_pseudogene Homo_sapiens 0 438
ENST00000469483 HIST2H2BF-002 processed_transcript Homo_sapiens 0 536
ENST00000498492 HIST2H2BC-001 processed_pseudogene Homo_sapiens 0 521
ENST00000545683 HIST2H2BF-201 protein_coding Homo_sapiens 0 540
ENST00000599962 H2BFS-001 protein_coding Homo_sapiens 0 523
ENST00000606613 HIST1H2BN-003 protein_coding Homo_sapiens 0 566
ENST00000607124 HIST1H2BJ-001 protein_coding Homo_sapiens 0 496
ENST00000609585 HIST2H2BB-002 processed_transcript Homo_sapiens 0 512
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 573
ENST00000614097 HIST1H2BE-001 protein_coding Homo_sapiens 0 556
ENST00000615966 HIST1H2BB-001 protein_coding Homo_sapiens 0 431
ENST00000616182 HIST1H2BO-001 protein_coding Homo_sapiens 0 521
ENST00000619466 HIST1H2BH-001 protein_coding Homo_sapiens 0 520
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0 518
ENST00000620458 HIST2H2BF-003 processed_transcript Homo_sapiens 4.99983e-42 174
ENST00000621112 HIST1H2BM-001 protein_coding Homo_sapiens 0 466

Loading