C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121043 Hoxa10-004 ENSMUSG00000000938 10090 - 6:52231922-52240854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMusclePlacentaTestisENSMUST00000121043
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000121043 17.549±14.13 18.497±3.98 0.021±0.00 0.595±0.19 8.159±1.07 9.498±0.72 0.030±0.02 0.096±0.00 2.764±0.73 1.456±0.61 0.322±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P7 CIL_0003P7_0002 CGP 6:52231197-52245810

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0003677 TAS DNA binding
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IDA multicellular organismal development
GO:0007283 IGI spermatogenesis
GO:0007338 IGI single fertilization
GO:0008584 IGI male gonad development
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0030326 IGI embryonic limb morphogenesis
GO:0060065 IGI uterus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082339 hoxd12a-201 protein_coding Danio_rerio 0.0000006 60
ENSDART00000142842 hoxd12a-001 protein_coding Danio_rerio 0.0000006 60
ENST00000225648 HOXB6-002 protein_coding Homo_sapiens 0.000008 57
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000283921 HOXA10-001 protein_coding Homo_sapiens 0 926
ENST00000396344 HOXA10-003 protein_coding Homo_sapiens 0 1583
ENST00000470193 HOXB6-003 processed_transcript Homo_sapiens 0.000002 57
ENST00000470747 HOXA10-HOXA9-001 protein_coding Homo_sapiens 0 320
ENST00000484302 HOXB6-001 protein_coding Homo_sapiens 0.00001 57
ENST00000519593 HOXA10-006 processed_transcript Homo_sapiens 0 510
ENST00000521421 HOXA10-005 processed_transcript Homo_sapiens 0 804
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0.00000005 62
ENST00000524368 HOXA10-004 processed_transcript Homo_sapiens 0 887
ENST00000613671 HOXA10-201 protein_coding Homo_sapiens 0 926

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