C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126402 Hoxa10-002 ENSMUSG00000000938 10090 - 6:52231199-52233324 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000126402
Transcript ID Adipose Adrenal Bladder Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000126402 2.976±0.00 0.101±0.03 12.677±1.15 0.404±0.00 4.007±0.00 0.023±0.01 3.117±0.48 0.493±0.30 1.692±1.38 0.064±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P7 CIL_0003P7_0002 CGP 6:52231197-52245810

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082339 hoxd12a-201 protein_coding Danio_rerio 0.0000007 60
ENSDART00000142842 hoxd12a-001 protein_coding Danio_rerio 0.0000007 60
ENST00000225648 HOXB6-002 protein_coding Homo_sapiens 0.000008 57
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000283921 HOXA10-001 protein_coding Homo_sapiens 0 1637
ENST00000396344 HOXA10-003 protein_coding Homo_sapiens 0 1005
ENST00000470193 HOXB6-003 processed_transcript Homo_sapiens 0.000002 57
ENST00000484302 HOXB6-001 protein_coding Homo_sapiens 0.00001 57
ENST00000519593 HOXA10-006 processed_transcript Homo_sapiens 0 508
ENST00000521421 HOXA10-005 processed_transcript Homo_sapiens 0 802
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0.00000005 62
ENST00000524368 HOXA10-004 processed_transcript Homo_sapiens 0 883
ENST00000613671 HOXA10-201 protein_coding Homo_sapiens 0 1637

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