C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125581 Hoxa10-001 ENSMUSG00000000938 10090 - 6:52231197-52234939 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125581
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125581 18.042±17.06 0.104±0.02 14.089±1.20 0.082±0.00 1.794±1.02 6.713±2.29 4.628±1.16 0.027±0.03 0.050±0.00 1.784±0.43 5.162±2.54 0.922±0.56 0.346±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P7 CIL_0003P7_0002 CGP 6:52231197-52245810

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IGI skeletal system development
GO:0003677 TAS DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IDA multicellular organismal development
GO:0007283 IGI spermatogenesis
GO:0007338 IGI single fertilization
GO:0008584 IGI male gonad development
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0030326 IGI embryonic limb morphogenesis
GO:0042826 IEA histone deacetylase binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060065 IGI uterus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082339 hoxd12a-201 protein_coding Danio_rerio 0.000001 60
ENSDART00000142842 hoxd12a-001 protein_coding Danio_rerio 0.000001 60
ENST00000225648 HOXB6-002 protein_coding Homo_sapiens 0.000008 57
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000283921 HOXA10-001 protein_coding Homo_sapiens 0 2608
ENST00000396344 HOXA10-003 protein_coding Homo_sapiens 0 1005
ENST00000470193 HOXB6-003 processed_transcript Homo_sapiens 0.000002 57
ENST00000484302 HOXB6-001 protein_coding Homo_sapiens 0.00001 57
ENST00000519593 HOXA10-006 processed_transcript Homo_sapiens 0 508
ENST00000521421 HOXA10-005 processed_transcript Homo_sapiens 0 802
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 0.00000005 62
ENST00000524368 HOXA10-004 processed_transcript Homo_sapiens 0 883
ENST00000613671 HOXA10-201 protein_coding Homo_sapiens 0 1871

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