C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase D3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000234179 PRKD3-201 ENSG00000115825 9606 - 2:37250505-37317079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000234179
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000234179 6.684±0.00 3.401±0.00 4.644±0.86 4.194±1.60 3.215±0.00 1.942±0.00 4.613±0.00 2.704±0.00 3.600±0.00 1.627±0.39 13.294±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085G CIL_00085G_0001 VISTA 2:37116727-37718317
CIL_0002IL CIL_0002IL_0001 CGP 2:37201612-37253403
CIL_0008VK CIL_0008VK_0001 VISTA 2:37223010-37826535
CIL_0002IK CIL_0002IK_0001 CGP 2:37231631-37324808
CIL_0002IN CIL_0002IN_0001 CGP 2:37250502-37373322

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004697 IEA protein kinase C activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0007205 TAS protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0009103 IEA lipopolysaccharide biosynthetic process
GO:0016020 IEA membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0035556 IEA intracellular signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119284 Prkd3-002 protein_coding Mus_musculus 0 3607
ENSMUST00000168887 Prkd3-201 protein_coding Mus_musculus 0 3587
ENSMUST00000003191 Prkd3-001 protein_coding Mus_musculus 0 3587
ENSMUST00000118768 Prkd3-004 protein_coding Mus_musculus 0 3090
ENSDART00000112765 prkd3-201 protein_coding Danio_rerio 0 1136
ENSDART00000154755 prkd3-001 protein_coding Danio_rerio 0 1136
ENSMUST00000124229 Prkd3-006 retained_intron Mus_musculus 0 1061
ENSMUST00000118991 Prkd3-005 protein_coding Mus_musculus 0 1061
ENSMUST00000146917 Prkd3-003 processed_transcript Mus_musculus 0 1059
ENSMUST00000130070 Prkd3-007 retained_intron Mus_musculus 0 490
ENSDART00000110322 PRKD1-201 protein_coding Danio_rerio 1e-23 117
ENSDART00000153937 PRKD1-001 protein_coding Danio_rerio 1e-23 117

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