C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase D3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168887 Prkd3-201 ENSMUSG00000024070 10090 - 17:78949405-79020816 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverMusclePlacentaENSMUST00000168887
Transcript ID Brain Colon Heart Liver Muscle Placenta
ENSMUST00000168887 0.251±0.00 0.470±0.00 0.996±0.00 1.710±0.00 0.291±0.00 1.799±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085G CIL_00085G_0002 VISTA 17:78844758-79446183
CIL_0008VK CIL_0008VK_0002 VISTA 17:78923077-79528513
CIL_0002IK CIL_0002IK_0002 CGP 17:78937135-79020816
CIL_0002IN CIL_0002IN_0002 CGP 17:78949405-79090243

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004697 IEA protein kinase C activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0016020 IEA membrane
GO:0035556 IEA intracellular signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110322 PRKD1-201 protein_coding Danio_rerio 1e-19 104
ENSDART00000153937 PRKD1-001 protein_coding Danio_rerio 1e-19 104
ENST00000234179 PRKD3-201 protein_coding Homo_sapiens 0 3587
ENST00000291281 PRKD2-001 protein_coding Homo_sapiens 0 564
ENST00000379066 PRKD3-001 protein_coding Homo_sapiens 0 3587
ENST00000433867 PRKD2-201 protein_coding Homo_sapiens 0 564
ENST00000441905 NDUFAF7-012 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000443187 PRKD3-004 protein_coding Homo_sapiens 0 747
ENST00000443977 PRKD3-007 protein_coding Homo_sapiens 0 375
ENST00000452104 PRKD3-008 protein_coding Homo_sapiens 0 453
ENST00000464552 PRKD3-005 retained_intron Homo_sapiens 0 399
ENST00000469275 PRKD3-003 retained_intron Homo_sapiens 0 1644
ENST00000475912 PRKD3-006 retained_intron Homo_sapiens 0 699
ENST00000494667 PRKD3-002 retained_intron Homo_sapiens 0 2331
ENST00000593492 PRKD2-016 processed_transcript Homo_sapiens 1.00053e-42 178
ENST00000595515 PRKD2-004 protein_coding Homo_sapiens 0 486
ENST00000597390 PRKD2-018 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000597589 PRKD2-007 retained_intron Homo_sapiens 0 564
ENST00000599019 PRKD2-008 retained_intron Homo_sapiens 0 486
ENST00000600194 PRKD2-006 protein_coding Homo_sapiens 0 564
ENST00000601806 PRKD2-002 protein_coding Homo_sapiens 0 564
ENST00000602155 PRKD2-009 retained_intron Homo_sapiens 0 425

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