C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111980 Hoxd4-001 ENSMUSG00000101174 10090 + 2:74727074-74729123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000111980
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000111980 14.007±4.52 27.462±9.08 16.854±0.00 3.281±1.22 5.002±1.12 0.159±0.06 8.861±3.41 0.063±0.04 0.222±0.12 0.536±0.19 25.282±8.47 0.857±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017M CIL_00017M_0002 CGP 2:74704615-74748442
CIL_0006SE CIL_0006SE_0002 CGP 2:74711927-74748442

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082355 hoxd4a-001 protein_coding Danio_rerio 0 231
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 4e-17 94
ENST00000239144 HOXB8-001 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 3e-26 124
ENST00000249440 HOXD3-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0 1557
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 0.00000008 64
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 0 228
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000410016 HOXD3-004 protein_coding Homo_sapiens 0.00000002 66
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0 813
ENST00000498634 HOXB8-003 protein_coding Homo_sapiens 0.00000000000004 82
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 3e-17 94
ENST00000576562 HOXB8-002 protein_coding Homo_sapiens 0.00000000000006 82
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 0.0000001 64

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