C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105409-ENSG00000105737 CGP 9606 19:41966582-42069498
GeneTranscriptPositionBiotype
ENSG00000105409 (ATP1A3)
ATPase, Na+/K+ transporting, alpha 3 polypeptide 		ENST00000302102 (ATP1A3-001) 41966582-41994276 protein_coding
ENST00000441343 (ATP1A3-002) 41966582-41994214 non_stop_decay
ENST00000465007 (ATP1A3-009) 41988205-41988557 retained_intron
ENST00000468774 (ATP1A3-006) 41987999-41993522 processed_transcript
ENST00000473086 (ATP1A3-011) 41985067-41997497 protein_coding
ENST00000485672 (ATP1A3-003) 41984254-41985342 retained_intron
ENST00000543770 (ATP1A3-007) 41966621-41993467 protein_coding
ENST00000545399 (ATP1A3-008) 41966584-41994260 protein_coding
ENST00000602133 (ATP1A3-005) 41966584-41994079 protein_coding
ENSG00000105732 (ZNF574)
zinc finger protein 574 		ENST00000222339 (ZNF574-001) 42068477-42081410 protein_coding
ENST00000359044 (ZNF574-003) 42076166-42081405 protein_coding
ENST00000597391 (ZNF574-004) 42074671-42078982 protein_coding
ENST00000600245 (ZNF574-002) 42070366-42081549 protein_coding
ENST00000613064 (ZNF574-201) 42076138-42081565 protein_coding
ENSG00000105737 (GRIK5)
glutamate receptor, ionotropic, kainate 5 		ENST00000262895 (GRIK5-002) 41998321-42065770 protein_coding
ENST00000301218 (GRIK5-001) 42001786-42065805 protein_coding
ENST00000454993 (GRIK5-003) 41998321-42042901 retained_intron
ENST00000593562 (GRIK5-004) 41998814-42069498 protein_coding
ENST00000594528 (GRIK5-005) 42021331-42065805 nonsense_mediated_decay
ENST00000602210 (GRIK5-006) 41999243-42003764 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0003YN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040907-ENSMUSG00000003378 CGP 10090 7:24978167-25072369
GeneTranscriptPositionBiotype
ENSMUSG00000003378 (Grik5)
glutamate receptor, ionotropic, kainate 5 (gamma 2) 		ENSMUST00000003468 (Grik5-201) 25009853-25072369 protein_coding
ENSMUSG00000040907 (Atp1a3)
ATPase, Na+/K+ transporting, alpha 3 polypeptide 		ENSMUST00000080882 (Atp1a3-001) 24978167-25005937 protein_coding
ENSMUST00000102858 (Atp1a3-002) 24978167-25005895 protein_coding
ENSMUST00000125444 (Atp1a3-005) 25000571-25005957 retained_intron
ENSMUST00000146595 (Atp1a3-003) 24992177-25005907 retained_intron
ENSMUST00000154077 (Atp1a3-004) 24998659-25001197 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YN_0001ENSG00000105409ENST00000302102ENST00000441343ENST00000465007ENST00000468774ENST00000473086ENST00000485672ENST00000543770ENST00000545399ENST00000602133ENSG00000105732ENST00000222339ENST00000359044ENST00000597391ENST00000600245ENST00000613064ENSG00000105737ENST00000262895ENST00000301218ENST00000454993ENST00000593562ENST00000594528ENST00000602210CIL_0003YN_0002ENSMUSG00000003378ENSMUST00000003468ENSMUSG00000040907ENSMUST00000080882ENSMUST00000102858ENSMUST00000125444ENSMUST00000146595ENSMUST00000154077
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YN_0001ENSG00000105409ENST00000302102ENST00000441343ENST00000468774ENST00000473086ENST00000485672ENST00000543770ENST00000545399ENST00000602133ENSG00000105732ENST00000222339ENST00000359044ENST00000600245ENST00000613064ENSG00000105737ENST00000262895ENST00000301218ENST00000454993ENST00000593562ENST00000594528ENST00000602210CIL_0003YN_0002ENSMUSG00000003378ENSMUST00000003468ENSMUSG00000040907ENSMUST00000080882ENSMUST00000102858ENSMUST00000125444ENSMUST00000146595ENSMUST00000154077
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105409 ENST00000302102 0.069±0.00 N/A N/A 102.173±65.79 N/A 4.709±0.00 56.247±46.28 N/A 0.284±0.00 N/A N/A N/A 0.049±0.00 17.675±4.11
ENST00000441343 N/A 0.598±0.00 N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A 0.227±0.12 0.113±0.06 34.882±22.84
ENST00000465007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468774 N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A
ENST00000473086 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A 0.126±0.00 N/A N/A
ENST00000485672 N/A N/A N/A N/A 0.291±0.00 N/A N/A 0.114±0.00 0.022±0.00 0.138±0.00 0.235±0.00 0.113±0.00 N/A N/A
ENST00000543770 N/A 0.525±0.00 N/A N/A N/A N/A N/A 0.007±0.00 0.016±0.00 N/A 0.128±0.13 0.093±0.06 0.555±0.00 N/A
ENST00000545399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.779±0.00
ENST00000602133 N/A N/A N/A 12.172±0.00 0.092±0.02 N/A N/A 0.019±0.00 N/A 0.095±0.00 0.019±0.00 0.029±0.00 N/A N/A
ENSG00000105732 ENST00000222339 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 N/A N/A N/A N/A
ENST00000359044 N/A 2.223±0.00 N/A 1.948±0.00 N/A N/A 0.345±0.00 1.272±0.00 0.934±0.00 2.328±0.00 0.748±0.00 1.511±0.00 2.822±0.00 9.717±5.51
ENST00000597391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600245 N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613064 3.660±0.00 2.720±0.00 0.215±0.00 1.797±0.73 2.247±1.83 2.452±1.84 1.174±0.42 1.671±1.34 0.810±0.07 1.368±0.85 4.936±0.00 4.703±3.91 3.781±1.72 7.505±0.00
ENSG00000105737 ENST00000262895 0.566±0.00 2.488±0.00 N/A 11.824±0.00 0.398±0.00 3.819±0.00 0.509±0.37 4.208±0.00 N/A 0.868±0.00 0.452±0.00 4.511±4.76 N/A 8.367±0.47
ENST00000301218 N/A N/A N/A N/A N/A 0.298±0.00 0.031±0.00 N/A N/A N/A N/A N/A N/A 12.578±0.00
ENST00000454993 N/A N/A N/A 1.457±0.00 0.073±0.00 2.968±0.00 N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A
ENST00000593562 N/A N/A 1.432±0.00 1.714±0.00 0.100±0.06 N/A N/A N/A 0.675±0.00 0.023±0.00 N/A 0.117±0.00 N/A 2.359±0.00
ENST00000594528 N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00 0.272±0.00 0.034±0.00 N/A 0.030±0.00 N/A
ENST00000602210 N/A N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003378 ENSMUST00000003468 8.248±3.65 12.563±3.62 14.957±0.32 67.159±12.19 5.905±2.54 6.678±1.23 2.719±0.65 4.647±1.51 3.150±0.99 8.971±0.45 1.156±0.30 20.723±6.87 2.021±0.97 25.500±9.52
ENSMUSG00000040907 ENSMUST00000080882 2.961±0.23 56.430±6.16 0.310±0.09 330.184±341.58 6.500±1.59 0.619±0.28 0.415±0.14 0.522±0.12 0.226±0.18 2.277±0.13 0.078±0.04 8.487±5.96 0.371±0.19 0.080±0.03
ENSMUST00000102858 N/A N/A 0.027±0.00 N/A N/A N/A N/A 0.062±0.00 0.043±0.01 0.313±0.07 N/A 1.168±0.00 N/A N/A
ENSMUST00000125444 N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A 0.625±0.00
ENSMUST00000146595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSMUST00000154077 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.05 N/A N/A N/A N/A N/A

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