C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing ring finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263666 PDZRN3-001 ENSG00000121440 9606 - 3:73382433-73624940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263666 3.968±0.00 5.149±0.00 0.778±0.00 1.677±0.73 7.069±6.07 6.011±3.43 11.130±6.65 4.853±0.00 7.981±0.00 4.407±0.00 5.085±0.00 13.175±12.05 4.225±1.17 3.542±2.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098G CIL_00098G_0001 VISTA 3:73222646-73825117

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0007528 IEA neuromuscular junction development
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031594 IEA neuromuscular junction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075994 Pdzrn3-001 protein_coding Mus_musculus 0 4292
ENSMUST00000124884 Pdzrn3-004 processed_transcript Mus_musculus 0 630
ENSMUST00000151175 Pdzrn3-003 protein_coding Mus_musculus 0 545
ENSMUST00000035399 Pdzrn4-201 protein_coding Mus_musculus 0 385
ENSMUST00000169942 Pdzrn4-202 protein_coding Mus_musculus 0 385
ENSDART00000114330 pdzrn3b-001 protein_coding Danio_rerio 0 359
ENSMUST00000144505 Pdzrn3-002 retained_intron Mus_musculus 0 315
ENSDART00000004678 PDZD4 (2 of 2)-201 protein_coding Danio_rerio 7e-40 171

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