C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cyclin L1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295925 CCNL1-201 ENSG00000163660 9606 - 3:157157023-157160094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000295925
Transcript ID Muscle
ENST00000295925 18.736±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028X CIL_00028X_0001 CGP 3:156825481-157160760
CIL_00081H CIL_00081H_0001 VISTA 3:156827989-157431369
CIL_00028W CIL_00028W_0001 CGP 3:157146508-157533619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122919 Ccnl1-004 retained_intron Mus_musculus 0 737
ENSMUST00000154585 Ccnl1-007 nonsense_mediated_decay Mus_musculus 0 737
ENSMUST00000129002 Ccnl1-002 nonsense_mediated_decay Mus_musculus 0 737
ENSMUST00000135719 Ccnl1-003 nonsense_mediated_decay Mus_musculus 0 676
ENSMUST00000149160 Ccnl1-006 retained_intron Mus_musculus 0 625
ENSMUST00000142153 Ccnl1-005 retained_intron Mus_musculus 0 625
ENSMUST00000029416 Ccnl1-001 protein_coding Mus_musculus 0 625
ENSMUST00000148623 Ccnl1-008 retained_intron Mus_musculus 0 396
ENSMUST00000145186 Ccnl1-010 nonsense_mediated_decay Mus_musculus 4.06377e-44 182
ENSMUST00000144810 Ccnl1-009 nonsense_mediated_decay Mus_musculus 9e-26 121

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