C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin L1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029416 Ccnl1-001 ENSMUSG00000027829 10090 - 3:65946151-65958249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029416
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029416 8.797±2.53 53.428±13.54 11.047±0.41 18.607±4.32 55.298±33.64 41.023±9.11 2.390±1.00 7.309±4.89 10.631±5.52 26.863±12.39 1.528±0.04 85.379±12.85 9.029±1.11 9.453±3.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081H CIL_00081H_0002 VISTA 3:65626895-66230134
CIL_00028X CIL_00028X_0002 CGP 3:65666228-65958249
CIL_00028W CIL_00028W_0002 CGP 3:65946151-66296837

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0008023 ISA transcription elongation factor complex
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295925 CCNL1-201 protein_coding Homo_sapiens 0 625
ENST00000295926 CCNL1-001 protein_coding Homo_sapiens 0 2874
ENST00000461804 CCNL1-002 protein_coding Homo_sapiens 0 1812
ENST00000464316 CCNL1-006 retained_intron Homo_sapiens 0 1965
ENST00000464575 CCNL1-015 retained_intron Homo_sapiens 0 392
ENST00000464679 CCNL1-019 retained_intron Homo_sapiens 0 739
ENST00000465947 CCNL1-012 nonsense_mediated_decay Homo_sapiens 0 625
ENST00000466101 CCNL1-011 retained_intron Homo_sapiens 0 444
ENST00000467081 CCNL1-014 retained_intron Homo_sapiens 0 449
ENST00000467849 CCNL1-022 retained_intron Homo_sapiens 0 285
ENST00000468977 CCNL1-020 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000470121 CCNL1-005 nonsense_mediated_decay Homo_sapiens 0 1317
ENST00000471044 CCNL1-010 retained_intron Homo_sapiens 0 641
ENST00000471247 CCNL1-008 retained_intron Homo_sapiens 0 1555
ENST00000474539 CCNL1-007 retained_intron Homo_sapiens 0 1855
ENST00000475298 CCNL1-003 nonsense_mediated_decay Homo_sapiens 0 1853
ENST00000476367 CCNL1-004 retained_intron Homo_sapiens 0 1109
ENST00000476744 CCNL1-021 retained_intron Homo_sapiens 0 857
ENST00000477127 CCNL1-009 nonsense_mediated_decay Homo_sapiens 0 1112
ENST00000478454 CCNL1-016 retained_intron Homo_sapiens 0 327
ENST00000479052 CCNL1-017 processed_transcript Homo_sapiens 0 549
ENST00000479596 CCNL1-013 retained_intron Homo_sapiens 0 625
ENST00000481173 CCNL1-024 retained_intron Homo_sapiens 0 303
ENST00000483789 CCNL1-018 retained_intron Homo_sapiens 0 231
ENST00000495471 CCNL1-023 retained_intron Homo_sapiens 5e-40 169

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