C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: filamin B, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295956 FLNB-001 ENSG00000136068 9606 + 3:58008400-58172251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295956
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295956 27.330±0.00 13.829±0.00 0.614±0.00 6.954±3.34 15.775±2.80 2.249±1.89 8.948±2.10 4.356±1.26 10.065±2.74 1.977±0.00 13.094±5.99 22.006±4.95 9.371±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UM CIL_0002UM_0001 CGP 3:58008400-58214697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 NAS actin binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007016 TAS cytoskeletal anchoring at plasma membrane
GO:0007165 TAS signal transduction
GO:0015629 TAS actin cytoskeleton
GO:0016021 NAS integral component of membrane
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030036 TAS actin cytoskeleton organization
GO:0030154 IEA cell differentiation
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052678 Flnb-001 protein_coding Mus_musculus 0 9258
ENSMUST00000101454 Flna-201 protein_coding Mus_musculus 0 804
ENSMUST00000130007 Flna-013 protein_coding Mus_musculus 0 804
ENSMUST00000033699 Flna-003 protein_coding Mus_musculus 0 804
ENSMUST00000114299 Flna-002 protein_coding Mus_musculus 0 804
ENSMUST00000144429 Flna-001 nonsense_mediated_decay Mus_musculus 0 804
ENSMUST00000090474 Flnc-201 protein_coding Mus_musculus 0 771
ENSMUST00000065090 Flnc-002 protein_coding Mus_musculus 0 771
ENSMUST00000101617 Flnc-001 protein_coding Mus_musculus 0 771
ENSMUST00000148404 Flnc-003 retained_intron Mus_musculus 0 518

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