C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: filamin C, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090474 Flnc-201 ENSMUSG00000068699 10090 + 6:29433153-29461888 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090474
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090474 6.488±4.83 0.254±0.10 20.446±6.34 1.457±0.71 3.030±1.64 8.067±3.60 13.051±1.51 0.413±0.25 0.126±0.09 1.353±0.62 41.267±2.40 8.508±2.45 3.978±2.13 0.474±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UF CIL_0005UF_0004 CGP 6:29396309-29461888

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0008092 IEA cytoskeletal protein binding
GO:0015629 TAS actin cytoskeleton
GO:0016020 IEA membrane
GO:0016528 IEA sarcoplasm
GO:0030029 TAS actin filament-based process
GO:0030506 IEA ankyrin binding
GO:0042383 IEA sarcolemma
GO:0048747 IDA muscle fiber development
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000026492 flncb-201 protein_coding Danio_rerio 0 3635
ENST00000295956 FLNB-001 protein_coding Homo_sapiens 0 771
ENST00000325888 FLNC-001 protein_coding Homo_sapiens 0 10490
ENST00000344736 FLNA-010 protein_coding Homo_sapiens 0 1916
ENST00000346177 FLNC-002 protein_coding Homo_sapiens 0 6645
ENST00000358537 FLNB-003 protein_coding Homo_sapiens 0 771
ENST00000360319 FLNA-001 protein_coding Homo_sapiens 0 2224
ENST00000369850 FLNA-002 protein_coding Homo_sapiens 0 2318
ENST00000369856 FLNA-022 protein_coding Homo_sapiens 0 2318
ENST00000388853 FLNC-003 retained_intron Homo_sapiens 0 514
ENST00000420627 FLNA-021 nonsense_mediated_decay Homo_sapiens 0 2305
ENST00000422373 FLNA-201 protein_coding Homo_sapiens 0 2224
ENST00000429972 FLNB-005 protein_coding Homo_sapiens 0 771
ENST00000466319 FLNA-005 processed_transcript Homo_sapiens 6e-37 158
ENST00000468939 FLNB-012 retained_intron Homo_sapiens 0 257
ENST00000469533 RP11-309L24.6-001 unprocessed_pseudogene Homo_sapiens 0 656
ENST00000481470 FLNB-006 retained_intron Homo_sapiens 0 527
ENST00000490882 FLNB-002 protein_coding Homo_sapiens 0 771
ENST00000490936 FLNA-003 retained_intron Homo_sapiens 0 726
ENST00000493452 FLNB-009 protein_coding Homo_sapiens 0 603
ENST00000610817 FLNA-202 protein_coding Homo_sapiens 0 2170

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