C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L36a-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298289 RPL36AL-001 ENSG00000165502 9606 - 14:49618519-49620685 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298289 87.973±0.00 103.415±0.00 7.259±0.00 52.330±0.00 48.306±14.54 121.329±0.00 26.704±10.28 52.602±8.80 51.653±10.93 55.152±29.11 53.224±29.25 128.474±95.39 103.052±65.30 51.961±25.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Q6 CIL_0005Q6_0001 CGP 14:49598697-49620685
CIL_0005Q5 CIL_0005Q5_0001 CGP 14:49618519-49623481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054544 Rpl36al-001 protein_coding Mus_musculus 0 466
ENSMUST00000110619 Rpl36al-002 protein_coding Mus_musculus 0 466
ENSMUST00000110620 Rpl36al-003 protein_coding Mus_musculus 0 466
ENSMUST00000120093 Rpl36a-ps3-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 394
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 387
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 385
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 377
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 372
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 342
ENSDART00000080919 rpl36a-001 protein_coding Danio_rerio 0 294
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 0 204
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 9.99967e-42 174

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