C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113607 Copg1-001 ENSMUSG00000030058 10090 + 6:87887814-87913595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113607
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113607 28.638±11.33 18.980±6.00 18.038±5.68 19.242±6.56 10.333±2.90 26.382±3.27 9.751±1.31 13.648±0.75 12.857±3.55 22.222±1.35 9.554±0.57 21.978±10.41 39.421±15.96 6.719±1.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000312 CIL_000312_0002 CGP 6:87842615-87913595
CIL_00030Z CIL_00030Z_0002 CGP 6:87887814-87936629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030126 IEA COPI vesicle coat
GO:0051683 IEA establishment of Golgi localization
GO:0072384 IEA organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043660 copg2-001 protein_coding Danio_rerio 0 1376
ENST00000314797 COPG1-001 protein_coding Homo_sapiens 0 3280
ENST00000330992 COPG2-003 protein_coding Homo_sapiens 0 821
ENST00000425248 COPG2-001 protein_coding Homo_sapiens 0 953
ENST00000504350 COPG1-005 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000504547 COPG1-015 retained_intron Homo_sapiens 0 593
ENST00000509889 COPG1-008 protein_coding Homo_sapiens 0 719
ENST00000512034 COPG1-013 retained_intron Homo_sapiens 0 254
ENST00000513965 COPG1-004 retained_intron Homo_sapiens 0 346
ENST00000514478 COPG1-006 nonsense_mediated_decay Homo_sapiens 0 505
ENST00000515725 COPG1-002 retained_intron Homo_sapiens 0 2935
ENST00000617523 COPG2-002 retained_intron Homo_sapiens 0 599

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