C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: filamin C, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325888 FLNC-001 ENSG00000128591 9606 + 7:128830377-128859272 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000325888
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000325888 5.002±0.00 25.871±0.00 7.279±0.00 10.381±1.06 54.176±43.95 18.312±11.70 3.883±0.00 53.441±0.00 16.984±0.00 12.294±8.68 2.937±0.69 32.453±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UF CIL_0005UF_0003 CGP 7:128790757-128859274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0008092 IPI cytoskeletal protein binding
GO:0016528 IEA sarcoplasm
GO:0030506 IPI ankyrin binding
GO:0034329 TAS cell junction assembly
GO:0042383 IDA sarcolemma
GO:0043034 TAS costamere
GO:0048747 IEA muscle fiber development
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090474 Flnc-201 protein_coding Mus_musculus 0 10490
ENSMUST00000065090 Flnc-002 protein_coding Mus_musculus 0 10150
ENSMUST00000101617 Flnc-001 protein_coding Mus_musculus 0 6643
ENSDART00000134286 flncb-001 protein_coding Danio_rerio 0 3144
ENSMUST00000033699 Flna-003 protein_coding Mus_musculus 0 1652
ENSMUST00000144429 Flna-001 nonsense_mediated_decay Mus_musculus 0 1639
ENSMUST00000101454 Flna-201 protein_coding Mus_musculus 0 1563
ENSMUST00000130007 Flna-013 protein_coding Mus_musculus 0 1563
ENSMUST00000114299 Flna-002 protein_coding Mus_musculus 0 1563
ENSMUST00000148404 Flnc-003 retained_intron Mus_musculus 0 878
ENSMUST00000052678 Flnb-001 protein_coding Mus_musculus 0 702

Loading