C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: filamin C, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346177 FLNC-002 ENSG00000128591 9606 + 7:128830426-128859274 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLungMuscleOvaryTestisENST00000346177
Transcript ID Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000346177 3.908±0.28 73.364±52.51 0.127±0.00 1.015±0.00 625.542±450.90 1.200±0.00 5.274±4.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UF CIL_0005UF_0003 CGP 7:128790757-128859274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0008092 IPI cytoskeletal protein binding
GO:0030506 IPI ankyrin binding
GO:0034329 TAS cell junction assembly
GO:0042383 IDA sarcolemma
GO:0043034 TAS costamere
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101617 Flnc-001 protein_coding Mus_musculus 0 10070
ENSMUST00000090474 Flnc-201 protein_coding Mus_musculus 0 6645
ENSMUST00000065090 Flnc-002 protein_coding Mus_musculus 0 6645
ENSMUST00000130007 Flna-013 protein_coding Mus_musculus 0 1838
ENSDART00000134286 flncb-001 protein_coding Danio_rerio 0 1700
ENSMUST00000033699 Flna-003 protein_coding Mus_musculus 0 1652
ENSMUST00000144429 Flna-001 nonsense_mediated_decay Mus_musculus 0 1639
ENSMUST00000101454 Flna-201 protein_coding Mus_musculus 0 1563
ENSMUST00000114299 Flna-002 protein_coding Mus_musculus 0 1563
ENSMUST00000148404 Flnc-003 retained_intron Mus_musculus 0 878
ENSMUST00000052678 Flnb-001 protein_coding Mus_musculus 0 702

Loading