C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355311 EBF3-001 ENSG00000108001 9606 - 10:129836800-129963841 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000355311
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000355311 1.982±0.00 0.031±0.00 0.032±0.00 0.356±0.00 0.367±0.15 0.264±0.00 1.250±0.00 0.096±0.00 0.426±0.22 0.100±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OP CIL_0007OP_0001 UCNEbase 10:128166009-130159815
CIL_00081R CIL_00081R_0001 VISTA 10:129302684-129904015
CIL_00097C CIL_00097C_0001 VISTA 10:129305804-129907046
CIL_0009BD CIL_0009BD_0001 VISTA 10:129347523-129949421
CIL_0008TP CIL_0008TP_0001 VISTA 10:129416557-130017922
CIL_0001LI CIL_0001LI_0001 CGP 10:129467184-129963841
CIL_0007UL CIL_0007UL_0001 VISTA 10:129592822-130194584

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106118 Ebf3-202 protein_coding Mus_musculus 0 4268
ENSMUST00000169486 Ebf3-204 protein_coding Mus_musculus 0 4087
ENSMUST00000168203 Ebf3-203 protein_coding Mus_musculus 0 4069
ENSMUST00000033378 Ebf3-201 protein_coding Mus_musculus 0 2290
ENSDART00000006698 ebf1a-201 protein_coding Danio_rerio 0 896
ENSDART00000134114 ebf1a-001 protein_coding Danio_rerio 0 527
ENSDART00000085381 ebf3-001 protein_coding Danio_rerio 0 431
ENSDART00000138241 ebf3-002 protein_coding Danio_rerio 0 346

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