C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366304 HMGB1P39-001 ENSG00000203489 9606 - 6:75319101-75319980 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366304
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366304 0.072±0.00 0.245±0.00 0.146±0.05 0.197±0.03 0.121±0.07 0.346±0.15 0.096±0.00 0.114±0.08 0.083±0.05 0.086±0.00 0.143±0.10 0.079±0.02 0.116±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000622 CIL_000622_0002 CGP 6:75252924-75493738
CIL_0006PT CIL_0006PT_0001 CGP 6:75291859-75718278

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 4.00001e-41 172
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 2e-39 167
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 2e-39 167
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 9e-28 128
ENSMUST00000119716 Gm13170-001 processed_pseudogene Mus_musculus 9e-23 111
ENSMUST00000119277 Gm13155-001 processed_pseudogene Mus_musculus 3e-22 110
ENSMUST00000121570 Gm8178-001 processed_pseudogene Mus_musculus 3e-22 110
ENSMUST00000120969 Gm13153-001 processed_pseudogene Mus_musculus 3e-22 110
ENSMUST00000119920 Gm13239-001 processed_pseudogene Mus_musculus 3e-22 110

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