C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1, pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179479 Hmgb1-ps9-201 ENSMUSG00000096722 10090 - 13:101038599-101039246 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000179479
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179479 0.206±0.05 0.221±0.02 0.562±0.51 0.416±0.39 0.338±0.07 0.376±0.05 0.323±0.01 0.101±0.04 0.673±0.92 0.148±0.05 0.075±0.03 0.779±0.50 0.101±0.06 0.178±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 843
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 643
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 893
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 893
ENST00000366304 HMGB1P39-001 processed_pseudogene Homo_sapiens 4.00001e-41 172
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 719
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 643
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 893
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 555
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 893
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 582
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 689
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 418
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 475
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 678
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 496
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 660
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 573
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 630
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 211
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 377
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 296
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 765
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 239
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 856
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 1.96182e-44 182
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 662

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