C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 3307
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176164 Gm3307-001 ENSMUSG00000093751 10090 + 7:63606019-63606650 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000176164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000176164 0.127±0.05 0.250±0.09 0.058±0.00 0.579±0.68 0.410±0.28 0.159±0.00 0.067±0.00 0.072±0.00 0.216±0.31 0.169±0.00 0.410±0.29 0.095±0.04 0.538±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ON CIL_0006ON_0002 CGP 7:63444751-63938915

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 595
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 765
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 765
ENST00000366304 HMGB1P39-001 processed_pseudogene Homo_sapiens 2e-39 167
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 676
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 595
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 765
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 765
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 501
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 601
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 276
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 706
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 300
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 750

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