C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1, related sequence 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117940 Hmgb1-rs18-001 ENSMUSG00000080815 10090 - 4:67518306-67518932 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FN CIL_0004FN_0002 CGP 4:66827584-68954397

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 665
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 505
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 662
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 662
ENST00000366304 HMGB1P39-001 processed_pseudogene Homo_sapiens 9e-28 128
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 586
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 505
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 662
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 440
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 662
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 449
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 551
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 329
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 544
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 272
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 652
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 649
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 551

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