C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366578 ACTN2-001 ENSG00000077522 9606 + 1:236686508-236764631 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366578
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366578 0.049±0.00 0.053±0.00 2.488±0.86 5.716±5.55 0.231±0.00 119.687±69.39 0.022±0.00 2.244±0.00 0.722±0.10 258.414±17.98 0.121±0.15 0.182±0.20 4.004±3.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097Y CIL_00097Y_0001 VISTA 1:236338883-236940914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005178 TAS integrin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005829 TAS cytosol
GO:0005856 NAS cytoskeleton
GO:0005884 TAS actin filament
GO:0005925 IMP focal adhesion
GO:0007155 TAS cell adhesion
GO:0007268 TAS synaptic transmission
GO:0007596 TAS blood coagulation
GO:0008092 IDA cytoskeletal protein binding
GO:0008307 TAS structural constituent of muscle
GO:0030018 IDA Z disc
GO:0030035 IDA microspike assembly
GO:0030049 TAS muscle filament sliding
GO:0030168 TAS platelet activation
GO:0030175 IDA filopodium
GO:0031093 TAS platelet alpha granule lumen
GO:0031143 TAS pseudopodium
GO:0031432 IPI titin binding
GO:0042391 IMP regulation of membrane potential
GO:0042802 IPI identical protein binding
GO:0042981 NAS regulation of apoptotic process
GO:0043197 TAS dendritic spine
GO:0043267 IMP negative regulation of potassium ion transport
GO:0043268 IDA positive regulation of potassium ion transport
GO:0044325 IPI ion channel binding
GO:0046983 IDA protein dimerization activity
GO:0048041 IMP focal adhesion assembly
GO:0051289 IDA protein homotetramerization
GO:0051373 IDA FATZ binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070080 IPI titin Z domain binding
GO:1901017 IMP negative regulation of potassium ion transmembrane transporter activity
GO:1901018 IDA positive regulation of potassium ion transmembrane transporter activity
GO:2000009 IMP negative regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064204 Actn2-001 protein_coding Mus_musculus 0 3694
ENSMUST00000168193 Actn2-201 protein_coding Mus_musculus 0 3687
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 1722
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 1537
ENSMUST00000006626 Actn3-001 protein_coding Mus_musculus 0 1375
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 1352
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 1249
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 1249
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 1249
ENSMUST00000110616 Actn2-002 protein_coding Mus_musculus 0 614
ENSDART00000032887 ACTN4 (1 of 3)-201 protein_coding Danio_rerio 0 460

Loading