C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110616 Actn2-002 ENSMUSG00000052374 10090 - 13:12308219-12340732 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryENSMUST00000110616
Transcript ID Adrenal Breast Colon Liver Lung Ovary
ENSMUST00000110616 0.026±0.01 0.376±0.00 0.456±0.17 0.078±0.05 4.607±0.00 0.492±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J8 CIL_0008J8_0002 VISTA 13:11813964-12415326
CIL_0008J9 CIL_0008J9_0002 VISTA 13:11824772-12428580
CIL_0008IY CIL_0008IY_0002 VISTA 13:11831518-12433920
CIL_00097Y CIL_00097Y_0002 VISTA 13:12065828-12670427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005865 TAS striated muscle thin filament
GO:0006936 IDA muscle contraction
GO:0030017 IDA sarcomere
GO:0030018 IDA Z disc
GO:0030274 IPI LIM domain binding
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030375 IDA thyroid hormone receptor coactivator activity
GO:0030674 TAS protein binding, bridging
GO:0051015 IDA actin filament binding
GO:2000273 IDA positive regulation of receptor activity
GO:2001141 IDA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 363
ENST00000366578 ACTN2-001 protein_coding Homo_sapiens 0 614
ENST00000492634 ACTN2-004 processed_transcript Homo_sapiens 0 614
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 305
ENST00000511191 ACTN3-005 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 390
ENST00000542672 ACTN2-201 protein_coding Homo_sapiens 0 614
ENST00000546208 ACTN2-202 protein_coding Homo_sapiens 0 614

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