C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006626 Actn3-001 ENSMUSG00000006457 10090 - 19:4861223-4877909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006626 0.485±0.05 0.111±0.14 0.379±0.16 0.441±0.12 139.169±143.70 0.231±0.06 0.136±0.05 2.858±2.13 0.139±0.12 3.063±2.93 2616.819±114.24 0.969±0.22 0.233±0.21 2.181±0.75

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005865 TAS striated muscle thin filament
GO:0006936 IDA muscle contraction
GO:0030017 IDA sarcomere
GO:0030018 IDA Z disc
GO:0030674 TAS protein binding, bridging
GO:0042803 TAS protein homodimerization activity
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 1790
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 1530
ENSDART00000032887 ACTN4 (1 of 3)-201 protein_coding Danio_rerio 0 300
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 1519
ENST00000252699 ACTN4-001 protein_coding Homo_sapiens 0 1308
ENST00000366578 ACTN2-001 protein_coding Homo_sapiens 0 1375
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 1561
ENST00000390009 ACTN4-010 protein_coding Homo_sapiens 0 702
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 1376
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 1622
ENST00000492634 ACTN2-004 processed_transcript Homo_sapiens 0 444
ENST00000494762 ACTN2-003 processed_transcript Homo_sapiens 0 248
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 3199
ENST00000511191 ACTN3-005 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 3426
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 1531
ENST00000542672 ACTN2-201 protein_coding Homo_sapiens 0 1341
ENST00000546208 ACTN2-202 protein_coding Homo_sapiens 0 761
ENST00000553370 ACTN1-015 protein_coding Homo_sapiens 0 427
ENST00000553779 ACTN1-016 protein_coding Homo_sapiens 0 315
ENST00000554158 ACTN1-017 processed_transcript Homo_sapiens 0 388
ENST00000554508 ACTN1-018 processed_transcript Homo_sapiens 0 374
ENST00000555616 ACTN1-012 protein_coding Homo_sapiens 0 649
ENST00000556433 ACTN1-011 protein_coding Homo_sapiens 0 579
ENST00000556571 ACTN1-014 protein_coding Homo_sapiens 0 315
ENST00000586538 ACTN4-012 protein_coding Homo_sapiens 0 433
ENST00000588618 ACTN4-007 retained_intron Homo_sapiens 0 996

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