C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368567 RPS27-001 ENSG00000177954 9606 + 1:153990759-153992150 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368567 1822.000±0.00 3257.830±0.00 110.172±0.00 309.164±32.98 912.702±399.70 1158.172±733.19 256.684±78.69 498.760±53.92 575.409±16.23 1142.841±769.68 661.818±250.03 3959.524±3676.75 1362.317±895.72 629.131±554.84

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000278 TAS mitotic cell cycle
GO:0003677 NAS DNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA:NAS ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008270 NAS zinc ion binding
GO:0008283 NAS cell proliferation
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053150 Rps27rt-001 protein_coding Mus_musculus 0 510
ENSMUST00000170122 Rps27-201 protein_coding Mus_musculus 0 418
ENSMUST00000118062 Gm15531-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000173599 Gm19246-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000118179 Rps27-ps1-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000121307 Gm13009-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000119835 Gm14175-001 unprocessed_pseudogene Mus_musculus 0 294
ENSMUST00000121070 Gm11456-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000119164 Gm11572-001 processed_pseudogene Mus_musculus 7.00649e-45 183

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