C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368648 EBF3-002 ENSG00000108001 9606 - 10:129835283-129963841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368648
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368648 4.021±0.00 4.286±0.00 0.073±0.00 2.722±2.30 0.451±0.42 0.377±0.00 0.260±0.00 0.030±0.00 0.114±0.01 0.532±0.00 0.234±0.11 0.799±0.49 0.904±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OP CIL_0007OP_0001 UCNEbase 10:128166009-130159815
CIL_00081R CIL_00081R_0001 VISTA 10:129302684-129904015
CIL_00097C CIL_00097C_0001 VISTA 10:129305804-129907046
CIL_0009BD CIL_0009BD_0001 VISTA 10:129347523-129949421
CIL_0008TP CIL_0008TP_0001 VISTA 10:129416557-130017922
CIL_0001LI CIL_0001LI_0001 CGP 10:129467184-129963841
CIL_0007UL CIL_0007UL_0001 VISTA 10:129592822-130194584

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033378 Ebf3-201 protein_coding Mus_musculus 0 4606
ENSMUST00000169486 Ebf3-204 protein_coding Mus_musculus 0 2422
ENSMUST00000168203 Ebf3-203 protein_coding Mus_musculus 0 2403
ENSMUST00000106118 Ebf3-202 protein_coding Mus_musculus 0 2290
ENSDART00000006698 ebf1a-201 protein_coding Danio_rerio 0 749
ENSDART00000134114 ebf1a-001 protein_coding Danio_rerio 0 440
ENSDART00000085381 ebf3-001 protein_coding Danio_rerio 0 431

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