C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box D3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371116 FOXD3-001 ENSG00000187140 9606 + 1:63323041-63325126 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLungMuscleOvaryTestisENST00000371116
Transcript ID Adrenal Brain Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000371116 0.116±0.00 0.032±0.00 0.131±0.11 0.057±0.00 0.366±0.34 0.135±0.00 0.245±0.00 0.187±0.17 1.702±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KW CIL_0007KW_0001 UCNEbase 1:62876629-63449336
CIL_0008AH CIL_0008AH_0001 VISTA 1:62899548-63500451
CIL_0002G4 CIL_0002G4_0001 CGP 1:63323041-63438562

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001701 ISS in utero embryonic development
GO:0001829 IEA trophectodermal cell differentiation
GO:0001892 IEA embryonic placenta development
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087285 Foxd3-001 protein_coding Mus_musculus 0 2117
ENSMUST00000105098 Foxd1-001 protein_coding Mus_musculus 0 409
ENSMUST00000068654 Foxd2-001 protein_coding Mus_musculus 0 398
ENSDART00000144772 BX664614.1-201 pseudogene Danio_rerio 0 390
ENSDART00000017695 foxd3-001 protein_coding Danio_rerio 0 390
ENSMUST00000058600 Foxd4-201 protein_coding Mus_musculus 0 370
ENSDART00000098940 FOXL2-201 protein_coding Danio_rerio 1e-20 106
ENSDART00000077753 foxc1b-001 protein_coding Danio_rerio 0.00000000000001 86
ENSMUST00000072915 Foxb2-201 protein_coding Mus_musculus 0.0001 53

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