C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002G4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187140-ENSG00000088035 CGP 9606 1:63323041-63438562
GeneTranscriptPositionBiotype
ENSG00000088035 (ALG6)
ALG6, alpha-1,3-glucosyltransferase 		ENST00000263440 (ALG6-006) 63370770-63437177 protein_coding
ENST00000371108 (ALG6-001) 63367590-63438562 protein_coding
ENST00000462390 (ALG6-005) 63419394-63429829 processed_transcript
ENST00000465969 (ALG6-003) 63413656-63429126 processed_transcript
ENST00000487136 (ALG6-002) 63367650-63402342 nonsense_mediated_decay
ENST00000494765 (ALG6-004) 63428238-63437133 processed_transcript
ENST00000603108 (ALG6-007) 63370770-63437175 nonsense_mediated_decay
ENSG00000187140 (FOXD3)
forkhead box D3 		ENST00000371116 (FOXD3-001) 63323041-63325126 protein_coding
ENSG00000230798 (FOXD3-AS1)
FOXD3 antisense RNA 1 (head to head) 		ENST00000418244 (FOXD3-AS1-003) 63320884-63322436 antisense
ENST00000426393 (FOXD3-AS1-005) 63320884-63321529 antisense
ENST00000427268 (FOXD3-AS1-001) 63320884-63324441 antisense
ENST00000431294 (FOXD3-AS1-004) 63320884-63323582 antisense
ENST00000449386 (FOXD3-AS1-002) 63320884-63322458 antisense
ENSG00000236674 (RP4-792G4.3)
 ENST00000455736 (RP4-792G4.3-001) 63359823-63361179 processed_pseudogene
ENSG00000252784 (Y_RNA)
Y RNA 		ENST00000516975 (Y_RNA.1-914) 63338263-63338372 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002G4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067261-ENSMUSG00000073792 CGP 10090 4:99656299-99763460
GeneTranscriptPositionBiotype
ENSMUSG00000067261 (Foxd3)
forkhead box D3 		ENSMUST00000087285 (Foxd3-001) 99656299-99658622 protein_coding
ENSMUSG00000073792 (Alg6)
asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase) 		ENSMUST00000097961 (Alg6-001) 99715665-99763460 protein_coding
ENSMUST00000107004 (Alg6-004) 99715676-99752885 protein_coding
ENSMUST00000124147 (Alg6-003) 99719152-99739473 retained_intron
ENSMUST00000137473 (Alg6-002) 99715664-99730223 retained_intron
ENSMUST00000139799 (Alg6-006) 99715676-99753076 protein_coding
ENSMUST00000141870 (Alg6-005) 99715676-99746384 processed_transcript
ENSMUST00000144805 (Alg6-007) 99715665-99762311 retained_intron
ENSMUSG00000086592 (Gm12682)
predicted gene 12682 		ENSMUST00000144637 (Gm12682-001) 99662541-99712972 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002G4_0001ENSG00000088035ENST00000263440ENST00000371108ENST00000462390ENST00000465969ENST00000487136ENST00000494765ENST00000603108ENSG00000187140ENST00000371116ENSG00000230798ENST00000418244ENST00000426393ENST00000427268ENST00000431294ENST00000449386ENSG00000236674ENST00000455736ENSG00000252784ENST00000516975CIL_0002G4_0002ENSMUSG00000067261ENSMUST00000087285ENSMUSG00000073792ENSMUST00000097961ENSMUST00000107004ENSMUST00000124147ENSMUST00000137473ENSMUST00000139799ENSMUST00000141870ENSMUST00000144805ENSMUSG00000086592ENSMUST00000144637
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002G4_0001ENSG00000088035ENST00000263440ENST00000371108ENST00000465969ENST00000494765ENST00000603108ENSG00000187140ENST00000371116ENSG00000230798ENST00000418244ENST00000426393ENST00000427268ENST00000449386ENSG00000236674ENST00000455736ENSG00000252784ENST00000516975CIL_0002G4_0002ENSMUSG00000067261ENSMUST00000087285ENSMUSG00000073792ENSMUST00000097961ENSMUST00000107004ENSMUST00000137473ENSMUST00000141870ENSMUST00000144805ENSMUSG00000086592ENSMUST00000144637
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088035 ENST00000263440 1.329±0.00 1.254±0.00 N/A 0.621±0.22 1.806±0.88 1.769±0.00 0.739±0.00 1.495±1.09 1.249±0.34 0.906±0.02 1.286±0.00 2.563±0.79 3.021±0.86 1.892±1.13
ENST00000371108 0.218±0.00 N/A 0.323±0.00 N/A 0.345±0.00 0.165±0.00 0.145±0.00 0.318±0.26 0.124±0.00 0.217±0.00 N/A 0.700±0.00 0.477±0.09 0.403±0.00
ENST00000462390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465969 N/A N/A N/A 0.405±0.00 N/A N/A N/A N/A N/A 1.758±0.00 N/A N/A N/A 0.867±0.00
ENST00000487136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494765 N/A N/A N/A N/A N/A 1.030±0.00 N/A N/A 0.706±0.00 N/A N/A 0.554±0.00 N/A N/A
ENST00000603108 N/A 0.950±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.885±0.00
ENSG00000187140 ENST00000371116 N/A 0.116±0.00 N/A 0.032±0.00 0.131±0.11 N/A 0.057±0.00 0.366±0.34 N/A 0.135±0.00 0.245±0.00 0.187±0.17 N/A 1.702±0.00
ENSG00000230798 ENST00000418244 0.183±0.00 0.122±0.00 0.232±0.00 N/A 0.154±0.00 N/A 0.038±0.00 N/A 0.063±0.00 N/A 0.117±0.00 0.069±0.02 N/A 1.333±0.00
ENST00000426393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.191±0.00
ENST00000427268 0.379±0.00 N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.641±0.00 N/A N/A N/A
ENST00000431294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449386 N/A N/A N/A 0.062±0.00 N/A N/A 0.106±0.00 N/A N/A N/A N/A 0.127±0.00 N/A 1.095±0.00
ENSG00000236674 ENST00000455736 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.01
ENSG00000252784 ENST00000516975 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.648±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000067261 ENSMUST00000087285 0.159±0.02 0.697±0.31 1.383±0.46 0.983±0.35 0.427±0.13 1.457±0.19 0.318±0.08 0.053±0.03 0.026±0.02 0.224±0.11 0.591±0.09 0.130±0.05 0.087±0.08 0.176±0.06
ENSMUSG00000073792 ENSMUST00000097961 0.932±0.56 1.114±0.54 2.125±1.29 3.402±0.00 0.901±0.26 1.990±0.26 0.557±0.20 0.921±0.27 2.990±2.37 0.773±0.18 N/A 1.213±0.45 2.219±2.22 0.604±0.14
ENSMUST00000107004 1.906±0.00 0.694±0.00 N/A N/A 1.237±0.36 N/A N/A 1.308±0.36 0.755±0.00 1.307±0.37 N/A 1.726±0.40 2.027±0.00 N/A
ENSMUST00000124147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137473 0.247±0.16 0.108±0.03 N/A N/A 0.230±0.06 0.226±0.03 0.158±0.00 N/A 0.159±0.00 0.247±0.04 N/A 0.288±0.11 N/A 0.150±0.03
ENSMUST00000139799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141870 N/A N/A N/A N/A N/A 2.862±0.00 N/A 2.493±0.00 N/A N/A N/A 2.176±0.12 N/A N/A
ENSMUST00000144805 0.563±0.06 0.342±0.20 0.477±0.00 0.651±0.31 0.258±0.07 0.491±0.11 0.250±0.02 0.207±0.02 0.538±0.17 0.406±0.07 0.301±0.01 0.747±0.38 0.711±0.30 N/A
ENSMUSG00000086592 ENSMUST00000144637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.12 N/A N/A N/A

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