C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007KW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
FOXD3 UCNEbase 9606 1:62876629-63449336
GeneTranscriptPositionBiotype
ENSG00000088035 (ALG6)
ALG6, alpha-1,3-glucosyltransferase 		ENST00000263440 (ALG6-006) 63370770-63437177 protein_coding
ENST00000371108 (ALG6-001) 63367590-63438562 protein_coding
ENST00000462390 (ALG6-005) 63419394-63429829 processed_transcript
ENST00000465969 (ALG6-003) 63413656-63429126 processed_transcript
ENST00000487136 (ALG6-002) 63367650-63402342 nonsense_mediated_decay
ENST00000494765 (ALG6-004) 63428238-63437133 processed_transcript
ENST00000603108 (ALG6-007) 63370770-63437175 nonsense_mediated_decay
ENSG00000142856 (ITGB3BP)
integrin beta 3 binding protein (beta3-endonexin) 		ENST00000271002 (ITGB3BP-017) 63440773-63523215 protein_coding
ENST00000371092 (ITGB3BP-008) 63440773-63523194 protein_coding
ENST00000460251 (ITGB3BP-015) 63457684-63523201 processed_transcript
ENST00000460394 (ITGB3BP-011) 63451725-63523182 processed_transcript
ENST00000461681 (ITGB3BP-018) 63440800-63457695 processed_transcript
ENST00000462285 (ITGB3BP-010) 63453615-63523209 processed_transcript
ENST00000463803 (ITGB3BP-013) 63442510-63454949 processed_transcript
ENST00000465781 (ITGB3BP-007) 63457465-63523201 processed_transcript
ENST00000476508 (ITGB3BP-019) 63449303-63490214 processed_transcript
ENST00000478138 (ITGB3BP-009) 63490103-63593721 processed_transcript
ENST00000478538 (ITGB3BP-016) 63446558-63447789 processed_transcript
ENST00000489099 (ITGB3BP-014) 63440773-63523502 nonsense_mediated_decay
ENST00000489863 (ITGB3BP-006) 63453776-63523255 processed_transcript
ENST00000492655 (ITGB3BP-012) 63440770-63447060 processed_transcript
ENSG00000187140 (FOXD3)
forkhead box D3 		ENST00000371116 (FOXD3-001) 63323041-63325126 protein_coding
ENSG00000203605 (RP11-335E6.2)
 ENST00000455038 (RP11-335E6.2-001) 63139250-63163153 lincRNA
ENSG00000223683 (AL138935.1)
 ENST00000429660 (AL138935.1-001) 63262113-63262707 processed_pseudogene
ENSG00000227485 (RP11-5P4.2)
 ENST00000418091 (RP11-5P4.2-001) 63024207-63025658 lincRNA
ENSG00000228734 (RP11-335E6.3)
 ENST00000449140 (RP11-335E6.3-001) 63249920-63251771 lincRNA
ENSG00000229537 (RP11-5P4.1)
 ENST00000420285 (RP11-5P4.1-003) 63000497-63010925 lincRNA
ENST00000420659 (RP11-5P4.1-001) 63000497-63012471 lincRNA
ENST00000425352 (RP11-5P4.1-002) 63000497-63011268 lincRNA
ENSG00000230798 (FOXD3-AS1)
FOXD3 antisense RNA 1 (head to head) 		ENST00000418244 (FOXD3-AS1-003) 63320884-63322436 antisense
ENST00000426393 (FOXD3-AS1-005) 63320884-63321529 antisense
ENST00000427268 (FOXD3-AS1-001) 63320884-63324441 antisense
ENST00000431294 (FOXD3-AS1-004) 63320884-63323582 antisense
ENST00000449386 (FOXD3-AS1-002) 63320884-63322458 antisense
ENSG00000234318 (RP4-771M4.3)
 ENST00000450811 (RP4-771M4.3-001) 62896009-62901639 lincRNA
ENSG00000236674 (RP4-792G4.3)
 ENST00000455736 (RP4-792G4.3-001) 63359823-63361179 processed_pseudogene
ENSG00000252259 (RNA5SP49)
RNA, 5S ribosomal pseudogene 49 		ENST00000516450 (RNA5SP49-201) 63186336-63186450 rRNA
ENSG00000252784 (Y_RNA)
Y RNA 		ENST00000516975 (Y_RNA.1-914) 63338263-63338372 misc_RNA
ENSG00000271593 (RP11-335E6.4)
 ENST00000432537 (RP11-335E6.4-002) 63159087-63160410 lincRNA
ENST00000447183 (RP11-335E6.4-001) 63159083-63162636 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007KW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
FOXD3 UCNEbase 10090 4:99267882-99771733
GeneTranscriptPositionBiotype
ENSMUSG00000067261 (Foxd3)
forkhead box D3 		ENSMUST00000087285 (Foxd3-001) 99656299-99658622 protein_coding
ENSMUSG00000070891 (Gm12689)
predicted gene 12689 		ENSMUST00000094955 (Gm12689-001) 99295900-99297258 protein_coding
ENSMUSG00000073792 (Alg6)
asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase) 		ENSMUST00000097961 (Alg6-001) 99715665-99763460 protein_coding
ENSMUST00000107004 (Alg6-004) 99715676-99752885 protein_coding
ENSMUST00000124147 (Alg6-003) 99719152-99739473 retained_intron
ENSMUST00000137473 (Alg6-002) 99715664-99730223 retained_intron
ENSMUST00000139799 (Alg6-006) 99715676-99753076 protein_coding
ENSMUST00000141870 (Alg6-005) 99715676-99746384 processed_transcript
ENSMUST00000144805 (Alg6-007) 99715665-99762311 retained_intron
ENSMUSG00000081150 (Gm12684)
predicted gene 12684 		ENSMUST00000118675 (Gm12684-001) 99430256-99431254 processed_pseudogene
ENSMUSG00000082442 (Gm12686)
predicted gene 12686 		ENSMUST00000120546 (Gm12686-001) 99418773-99419169 processed_pseudogene
ENSMUSG00000083698 (Gm12687)
predicted gene 12687 		ENSMUST00000119752 (Gm12687-001) 99615817-99616522 processed_pseudogene
ENSMUSG00000086096 (Gm12688)
predicted gene 12688 		ENSMUST00000136525 (Gm12688-001) 99653607-99654983 lincRNA
ENSMUSG00000086592 (Gm12682)
predicted gene 12682 		ENSMUST00000144637 (Gm12682-001) 99662541-99712972 antisense
ENSMUSG00000087332 (Gm12690)
predicted gene 12690 		ENSMUST00000132108 (Gm12690-001) 99569500-99573011 lincRNA

Mus musculus Ensembl (GRCm38)

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CIL_0007KW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
FOXD3 UCNEbase 7955 6:31747696-31976014
GeneTranscriptPositionBiotype
ENSDARG00000017617 (alg6)
asparagine-linked glycosylation 6 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) 		ENSDART00000012857 (alg6-201) 31757584-31779175 protein_coding
ENSDART00000130627 (alg6-002) 31775701-31779281 protein_coding
ENSDART00000150934 (alg6-001) 31757264-31779278 protein_coding
ENSDARG00000021032 (foxd3)
forkhead box D3 		ENSDART00000017695 (foxd3-001) 31784202-31786000 protein_coding
ENSDARG00000095311 (BX664614.1)
 ENSDART00000144772 (BX664614.1-201) 31784203-31785965 pseudogene
ENSDARG00000097493 (si:dkey-148h10.5)
si:dkey-148h10.5 		ENSDART00000156552 (si:dkey-148h10.5-001) 31738372-31751280 protein_coding
ENSDARG00000097944 (si:dkey-148h10.6)
si:dkey-148h10.6 		ENSDART00000155710 (si:dkey-148h10.6-001) 31786106-31799662 lincRNA

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007KW_0001ENSG00000088035ENST00000263440ENST00000371108ENST00000462390ENST00000465969ENST00000487136ENST00000494765ENST00000603108ENSG00000142856ENST00000271002ENST00000371092ENST00000460251ENST00000460394ENST00000461681ENST00000462285ENST00000463803ENST00000465781ENST00000476508ENST00000478138ENST00000478538ENST00000489099ENST00000489863ENST00000492655ENSG00000187140ENST00000371116ENSG00000203605ENST00000455038ENSG00000223683ENST00000429660ENSG00000227485ENST00000418091ENSG00000228734ENST00000449140ENSG00000229537ENST00000420285ENST00000420659ENST00000425352ENSG00000230798ENST00000418244ENST00000426393ENST00000427268ENST00000431294ENST00000449386ENSG00000234318ENST00000450811ENSG00000236674ENST00000455736ENSG00000252259ENST00000516450ENSG00000252784ENST00000516975ENSG00000271593ENST00000432537ENST00000447183CIL_0007KW_0002ENSMUSG00000067261ENSMUST00000087285ENSMUSG00000070891ENSMUST00000094955ENSMUSG00000073792ENSMUST00000097961ENSMUST00000107004ENSMUST00000124147ENSMUST00000137473ENSMUST00000139799ENSMUST00000141870ENSMUST00000144805ENSMUSG00000081150ENSMUST00000118675ENSMUSG00000082442ENSMUST00000120546ENSMUSG00000083698ENSMUST00000119752ENSMUSG00000086096ENSMUST00000136525ENSMUSG00000086592ENSMUST00000144637ENSMUSG00000087332ENSMUST00000132108CIL_0007KW_0003ENSDARG00000017617ENSDART00000012857ENSDART00000130627ENSDART00000150934ENSDARG00000021032ENSDART00000017695ENSDARG00000095311ENSDART00000144772ENSDARG00000097493ENSDART00000156552ENSDARG00000097944ENSDART00000155710
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088035 ENST00000263440 1.329±0.00 1.254±0.00 N/A 0.621±0.22 1.806±0.88 1.769±0.00 0.739±0.00 1.495±1.09 1.249±0.34 0.906±0.02 1.286±0.00 2.563±0.79 3.021±0.86 1.892±1.13
ENST00000371108 0.218±0.00 N/A 0.323±0.00 N/A 0.345±0.00 0.165±0.00 0.145±0.00 0.318±0.26 0.124±0.00 0.217±0.00 N/A 0.700±0.00 0.477±0.09 0.403±0.00
ENST00000462390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465969 N/A N/A N/A 0.405±0.00 N/A N/A N/A N/A N/A 1.758±0.00 N/A N/A N/A 0.867±0.00
ENST00000487136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494765 N/A N/A N/A N/A N/A 1.030±0.00 N/A N/A 0.706±0.00 N/A N/A 0.554±0.00 N/A N/A
ENST00000603108 N/A 0.950±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.885±0.00
ENSG00000142856 ENST00000271002 N/A N/A N/A 4.536±0.00 N/A N/A N/A N/A N/A N/A N/A 11.496±4.29 N/A N/A
ENST00000371092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187140 ENST00000371116 N/A 0.116±0.00 N/A 0.032±0.00 0.131±0.11 N/A 0.057±0.00 0.366±0.34 N/A 0.135±0.00 0.245±0.00 0.187±0.17 N/A 1.702±0.00
ENSG00000203605 ENST00000455038 0.131±0.00 0.510±0.00 N/A 0.195±0.00 0.249±0.00 0.082±0.00 0.124±0.00 0.460±0.00 0.091±0.00 0.014±0.00 0.437±0.00 0.068±0.05 N/A 0.415±0.00
ENSG00000223683 ENST00000429660 N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A 0.472±0.00
ENSG00000227485 ENST00000418091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.00
ENSG00000228734 ENST00000449140 0.014±0.00 0.082±0.00 N/A 0.014±0.00 0.053±0.00 0.049±0.00 N/A 0.013±0.00 0.011±0.00 N/A 0.035±0.00 0.141±0.00 0.048±0.00 0.535±0.28
ENSG00000229537 ENST00000420285 N/A N/A 0.566±0.00 N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A 0.062±0.00
ENST00000420659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425352 N/A N/A N/A 0.249±0.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00
ENSG00000230798 ENST00000418244 0.183±0.00 0.122±0.00 0.232±0.00 N/A 0.154±0.00 N/A 0.038±0.00 N/A 0.063±0.00 N/A 0.117±0.00 0.069±0.02 N/A 1.333±0.00
ENST00000426393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.191±0.00
ENST00000427268 0.379±0.00 N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.641±0.00 N/A N/A N/A
ENST00000431294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449386 N/A N/A N/A 0.062±0.00 N/A N/A 0.106±0.00 N/A N/A N/A N/A 0.127±0.00 N/A 1.095±0.00
ENSG00000234318 ENST00000450811 0.082±0.00 0.259±0.00 N/A 0.097±0.00 0.273±0.00 0.534±0.00 0.394±0.00 0.609±0.00 0.343±0.00 0.040±0.00 0.444±0.00 0.219±0.00 0.121±0.01 0.916±0.00
ENSG00000236674 ENST00000455736 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.01
ENSG00000252259 ENST00000516450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.00
ENSG00000252784 ENST00000516975 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.648±0.00
ENSG00000271593 ENST00000432537 N/A N/A N/A N/A N/A N/A 0.354±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000447183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.275±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000067261 ENSMUST00000087285 0.159±0.02 0.697±0.31 1.383±0.46 0.983±0.35 0.427±0.13 1.457±0.19 0.318±0.08 0.053±0.03 0.026±0.02 0.224±0.11 0.591±0.09 0.130±0.05 0.087±0.08 0.176±0.06
ENSMUSG00000070891 ENSMUST00000094955 0.227±0.14 0.147±0.12 0.448±0.10 0.251±0.17 0.241±0.12 0.178±0.09 0.101±0.04 0.139±0.05 0.225±0.11 0.157±0.08 0.205±0.07 0.209±0.12 0.132±0.04 0.265±0.12
ENSMUSG00000073792 ENSMUST00000097961 0.932±0.56 1.114±0.54 2.125±1.29 3.402±0.00 0.901±0.26 1.990±0.26 0.557±0.20 0.921±0.27 2.990±2.37 0.773±0.18 N/A 1.213±0.45 2.219±2.22 0.604±0.14
ENSMUST00000107004 1.906±0.00 0.694±0.00 N/A N/A 1.237±0.36 N/A N/A 1.308±0.36 0.755±0.00 1.307±0.37 N/A 1.726±0.40 2.027±0.00 N/A
ENSMUST00000124147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137473 0.247±0.16 0.108±0.03 N/A N/A 0.230±0.06 0.226±0.03 0.158±0.00 N/A 0.159±0.00 0.247±0.04 N/A 0.288±0.11 N/A 0.150±0.03
ENSMUST00000139799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141870 N/A N/A N/A N/A N/A 2.862±0.00 N/A 2.493±0.00 N/A N/A N/A 2.176±0.12 N/A N/A
ENSMUST00000144805 0.563±0.06 0.342±0.20 0.477±0.00 0.651±0.31 0.258±0.07 0.491±0.11 0.250±0.02 0.207±0.02 0.538±0.17 0.406±0.07 0.301±0.01 0.747±0.38 0.711±0.30 N/A
ENSMUSG00000081150 ENSMUST00000118675 0.039±0.00 N/A N/A 0.029±0.00 0.073±0.00 0.070±0.00 N/A 0.029±0.00 0.067±0.01 0.050±0.00 N/A 0.194±0.19 0.130±0.00 0.982±0.64
ENSMUSG00000082442 ENSMUST00000120546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A
ENSMUSG00000083698 ENSMUST00000119752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00
ENSMUSG00000086096 ENSMUST00000136525 0.143±0.08 0.305±0.15 N/A 0.757±0.00 0.334±0.16 0.569±0.34 0.216±0.16 0.139±0.06 0.040±0.02 0.386±0.25 1.015±0.51 0.204±0.04 0.141±0.10 0.272±0.18
ENSMUSG00000086592 ENSMUST00000144637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.12 N/A N/A N/A
ENSMUSG00000087332 ENSMUST00000132108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.886±1.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017617 ENSDART00000012857 N/A N/A N/A N/A N/A N/A 0.867±0.50 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000130627 N/A N/A N/A N/A N/A N/A 0.008±0.00 0.126±0.02 N/A N/A N/A N/A N/A N/A
ENSDART00000150934 N/A N/A N/A 1.858±0.96 N/A N/A 0.998±0.29 7.599±0.00 1.065±0.00 N/A 0.956±0.00 N/A N/A N/A
ENSDARG00000021032 ENSDART00000017695 N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A 4.414±0.00 N/A N/A N/A
ENSDARG00000095311 ENSDART00000144772 N/A N/A N/A 0.452±0.11 N/A N/A 0.280±0.15 0.478±0.48 N/A N/A 3.533±0.00 N/A N/A N/A
ENSDARG00000097493 ENSDART00000156552 N/A N/A N/A 0.335±0.15 N/A N/A 0.081±0.00 1.687±0.00 0.066±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097944 ENSDART00000155710 N/A N/A N/A 0.769±0.69 N/A N/A 0.308±0.18 0.161±0.03 0.211±0.00 N/A 0.512±0.00 N/A N/A N/A

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