C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 78, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372271 FAM78A-001 ENSG00000126882 9606 - 9:131258076-131276547 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372271
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372271 1.197±0.00 5.836±0.00 1.162±0.43 1.120±0.36 0.531±0.00 4.929±3.51 0.642±0.32 0.327±0.09 2.477±1.13 4.118±0.24 1.465±0.68 5.471±1.20 7.275±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0001 VISTA 9:131030990-131632063
CIL_0002EO CIL_0002EO_0002 CGP 9:131125561-131276547
CIL_0002VI CIL_0002VI_0002 CGP 9:131258076-131309262

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056406 Fam78a-001 protein_coding Mus_musculus 0 1530
ENSMUST00000139629 Fam78a-004 nonsense_mediated_decay Mus_musculus 0 1469
ENSMUST00000130178 Fam78a-003 processed_transcript Mus_musculus 0 505
ENSMUST00000190081 Fam78b-202 protein_coding Mus_musculus 0 377
ENSMUST00000165874 Fam78b-201 protein_coding Mus_musculus 0 377
ENSMUST00000128373 Fam78b-002 nonsense_mediated_decay Mus_musculus 0 377
ENSMUST00000122929 Fam78b-003 nonsense_mediated_decay Mus_musculus 0 377
ENSMUST00000126198 Fam78b-001 protein_coding Mus_musculus 0 377
ENSMUST00000156025 Fam78b-004 nonsense_mediated_decay Mus_musculus 0 377

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